Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00559 ATGAGTTCCTGTATACCTCAAGACCATGGCTTGCTGCCGGGGTTCTCGGATCCGGAACAATCAACTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGTCTCCAAACCGTTCCCGGGCTGGTTATTCTCTATGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCTGCAGTGCTTGTGTGTTGGGTGTTGTGGGCACATCGTATGGCATTTGGCGACCGATTGTTCTGGCTTGTTGGTAAGCCCGGCGTAGCGCTGTCTGAAAGGTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTGTTTTTCCAGTTTGCTTTCGCTGCCATTACTGTCGTGTTGCTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTCTCTGTTACACTGTGGGGGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACAGCTGCATACTGGGTCGGGCCACGACACTCCCGTGACAGGCAAAACTTCCCACCAAACAACATACTACACATGGTTGGCGGTGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGGGTCGTATTACATCGCTAGCCATTTTGAACACACATGTTTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGGGCTTGTAGACACTGTCGCAGCCGTGGTGATGGGCGTCCTTGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGAAGGTTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGCGTCTTCCACACACACGCTGTGGCTGGTTCCATGGGGGGACTGCTCACAGGTTTCTTTGCCAAGCCCAGCCTTCTGAGAATGATGTATCCAGATTCTCTATACAGTCCAGGCTTCCTGTACGCCATCTCTGATAGAAAGCTCAAAGATGGCCTCAAACAAGTAGGCATCCAGTTCGCAGGAGCAGTGTTTATTACCCTCTGGAATGCCATTTTTACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAACTTACGGATGAAAGAAGAGGATCTGGAGATTGGTGATGATGCTGCACATGGAGAAGAACCCTATGCGTTGTGGGGAGAACCAGATTTTGCAGTAATTCTCGCTGCTGCTGCTGCAGCCACTCCAGCTCAGGAGTCTCAAGACGCCATTTCTGCCTCCATGGTGAACAGCCTCACAAATAAAAACTTGGACCACTATGGCATACCAAACACGATTATAGGTGATCTTCCAGAGCCTAAGCAAGAGTTACCTCAAGTAATCATCTCTGTCATGAAGGCAGTTTACTTGGCCTTGGAAGCTGTTTCAACAGCTTTATTAGTTCATAAGTTTTTGTGTCTTGACCAGAATAGAGGCAAATGTCCAATGGGGTTAAACCTCCCTGGAAATGCAGTGGAGCGAAATGAAAGATACAGAAAAGCCAGAGAGAGAGAGAGAGATTGTAATTTTAATGCCATGTAG 1725 48.87 MSSCIPQDHGLLPGFSDPEQSTPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGDRLFWLVGKPGVALSERYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTVAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYSPGFLYAISDRKLKDGLKQVGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGEPDFAVILAAAAAATPAQESQDAISASMVNSLTNKNLDHYGIPNTIIGDLPEPKQELPQVIISVMKAVYLALEAVSTALLVHKFLCLDQNRGKCPMGLNLPGNAVERNERYRKARERERDCNFNAM 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4484792 4487410 + Lsi01G005590.1 Lsi01g00559 653217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00559 574 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi01g00559 574 Gene3D Ammonium transporter AmtB like domains 14 447 IPR029020 -
Lsi01g00559 574 SUPERFAMILY Ammonium transporter 25 426 - -
Lsi01g00559 574 PANTHER AMMONIUM TRANSPORTER 11 450 - -
Lsi01g00559 574 TIGRFAM amt: ammonium transporter 30 444 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi01g00559 574 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi01g00559 574 PANTHER AMMONIUM TRANSPORTER MEP2 11 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi01g00559 574 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005887
Lsi01g00559 574 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005887
Lsi01g00559 574 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005887
Lsi01g00559 574 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00559 Lsi-Chr1:4484792 Lsi08g01170 Lsi-Chr8:20318908 0 dispersed
Lsi01g00559 Lsi-Chr1:4484792 Lsi09g01170 Lsi-Chr9:18944306 6.77E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00559 K03320 - csv:101218977 878.626