Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00563 ATGGCGGAAAGTTTAGAAGAAGTATATCTCCATGGCGATCTCGACCTTAAAATCTTCGAGGCTGTCGAGTTGCCTAACATGGACATTGTATCTGAGCGTCTTCGTCGTTGCTTCACAGCCTGTGGTACTCTCGATTACTCTGCCATTAAATCCGTTGGAACCAACTCCCGTTCTGCTGCCGGTGAGGGGAAAGTTCACCACGGCCGTGGAAAAATCATCACCAGCGATCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACTCGCGTCATAAAGAATTCCCAAAATCCCTATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGATGACGATGTTTTTGGCGCTGAAGTTATGGGGACGGTTAAAATCCCTGCTCAGAAAATTGCCTCCGGGGAGACCATTAGTGGGTGGCATACGGTGATTGGCTCAAATGGGAAGCCACCGAAGCGTGGCACTTCACTTCGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAATCCAGTATATCGACACGGAATTGCTGGAGATCCCCAGCATAAGGGTGTGCGGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTATCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGCACATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATTTGCTATGCTATATCAGAGGCTCATCATATGATTTATATAGTTGGTTGGTCGGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCATTGCCACGAGGAGGAGATTTGACTCTTGGTGATCTCCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGATGATTTGGGATGATAAGACTTCTCATGATAAGTTCTTTATCAACACGGAAGGATTGATGCAGACACATGATGAGGAAACCAGAAAATTTTTCAAGCATTCTTCTGTAATCTGTGTGCTCTCACCTCGCTATGCAAGCGGCAAACTAAGCTATGTGAAACAAAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAACAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGCGATGGTCGATACGATACACCTGAGCATCGATTGTTCCATGACCTCGACACAGTATTTAAGGATGATTTTCATAATCCTACAATTCCTCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAGAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTAGTCACTGGCACGATGCTTTAATAAAGATAGAGCGTATTTCATGGATCCTAAGCCCTCATGTAACTCTCTTAGCAGATGGTTCAACAAAAGTTCCAGAGGATGACCCTAAAGTATATGTTTCAAAGGAAGAAGATCCTGAAAACTGGCATGTTCAGATTTTTCGATCCATCGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCTGAGTCGCAGAACCTTGTTTGTGCAAAAAACTTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCACAACATTTTATTTATATTGAAAATCAGTATTTTATTGGATCATCATATGGATGGCCGGGATATAAAAATGCCGGGGCTGACCATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCTGAGGGAGATCCGAATAGCGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGCACCCTCTGGACTTTCTAAATTTTTACTGCCTTGGCAAACGGGAAGAAATTCCTGAGAATGGGCCGACCACTGACGATGCAACGGTATGTAATTCACTAAAACATCGACGGTTTATGATTTACGTTCATGCCAAGGGGATGATAGTAGATGATGAATATGTTATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAAGACACCGAGATAGCCACAGGTGCATATCAGCCGCATCACACGTGGGCGAAGAAAAAGAAACACCCACGTGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTCAATCCATGTTTCAAGGAGCCAGAAACTTTGGAATGTGTCAGAAAAGTCAATGGGATTGCTGAGGATAACTGGAACAGATTCGCAGCCGATGAATTCACGACATTACAGGGCCACCTTCTCAGGTATCCGGTGCTCGTGGATGGTGACGGAAAAGTCAGCCCTCTACCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACTACATAA 2574 44.33 MAESLEEVYLHGDLDLKIFEAVELPNMDIVSERLRRCFTACGTLDYSAIKSVGTNSRSAAGEGKVHHGRGKIITSDPYVTVRVPQATVARTRVIKNSQNPYWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQKIASGETISGWHTVIGSNGKPPKRGTSLRIEMKFTSVEENPVYRHGIAGDPQHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPHIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICVLSPRYASGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGAKAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCRRISHWHDALIKIERISWILSPHVTLLADGSTKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPLDFLNFYCLGKREEIPENGPTTDDATVCNSLKHRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPRGQIYGYRMSLWSEHLGMLNPCFKEPETLECVRKVNGIAEDNWNRFAADEFTTLQGHLLRYPVLVDGDGKVSPLPGHENFPDVGGKIIGSHSTAIPDVVTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4495939 4503975 - Lsi01G005630.1 Lsi01g00563 653221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00563 857 SUPERFAMILY Phospholipase D/nuclease 553 787 - -
Lsi01g00563 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Lsi01g00563 857 Gene3D Endonuclease Chain A 526 752 - -
Lsi01g00563 857 SMART pld_4 702 729 IPR001736 GO:0003824
Lsi01g00563 857 SMART pld_4 357 392 IPR001736 GO:0003824
Lsi01g00563 857 SUPERFAMILY Phospholipase D/nuclease 196 461 - -
Lsi01g00563 857 Gene3D Endonuclease Chain A 228 466 - -
Lsi01g00563 857 Gene3D C2 domain 11 184 IPR035892 -
Lsi01g00563 857 SMART C2_3c 13 151 IPR000008 -
Lsi01g00563 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Lsi01g00563 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi01g00563 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Lsi01g00563 857 Pfam C2 domain 12 153 IPR000008 -
Lsi01g00563 857 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Lsi01g00563 857 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Lsi01g00563 857 PANTHER PHOSPHOLIPASE D DELTA 5 857 - -
Lsi01g00563 857 Pfam Phospholipase D C terminal 778 846 IPR024632 -
Lsi01g00563 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Lsi01g00563 857 CDD C2_plant_PLD 8 175 - -
Lsi01g00563 857 PANTHER PHOSPHOLIPASE D 5 857 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00563 Lsi-Chr1:4495939 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi07g01376 Lsi-Chr7:20013246 Lsi01g00563 Lsi-Chr1:4495939 0 transposed
Lsi09g01919 Lsi-Chr9:28031240 Lsi01g00563 Lsi-Chr1:4495939 0 transposed
Lsi01g00563 Lsi-Chr1:4495939 Lsi08g01289 Lsi-Chr8:21243604 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00563 K01115 - csv:101217251 1678.69