Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00563 ATGGCGGAAAGTTTAGAAGAAGTATATCTCCATGGCGATCTCGACCTTAAAATCTTCGAGGCTGTCGAGTTGCCTAACATGGACATTGTATCTGAGCGTCTTCGTCGTTGCTTCACAGCCTGTGGTACTCTCGATTACTCTGCCATTAAATCCGTTGGAACCAACTCCCGTTCTGCTGCCGGTGAGGGGAAAGTTCACCACGGCCGTGGAAAAATCATCACCAGCGATCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACTCGCGTCATAAAGAATTCCCAAAATCCCTATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGATGACGATGTTTTTGGCGCTGAAGTTATGGGGACGGTTAAAATCCCTGCTCAGAAAATTGCCTCCGGGGAGACCATTAGTGGGTGGCATACGGTGATTGGCTCAAATGGGAAGCCACCGAAGCGTGGCACTTCACTTCGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAATCCAGTATATCGACACGGAATTGCTGGAGATCCCCAGCATAAGGGTGTGCGGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTATCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGCACATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATTTGCTATGCTATATCAGAGGCTCATCATATGATTTATATAGTTGGTTGGTCGGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCATTGCCACGAGGAGGAGATTTGACTCTTGGTGATCTCCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGATGATTTGGGATGATAAGACTTCTCATGATAAGTTCTTTATCAACACGGAAGGATTGATGCAGACACATGATGAGGAAACCAGAAAATTTTTCAAGCATTCTTCTGTAATCTGTGTGCTCTCACCTCGCTATGCAAGCGGCAAACTAAGCTATGTGAAACAAAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAACAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGCGATGGTCGATACGATACACCTGAGCATCGATTGTTCCATGACCTCGACACAGTATTTAAGGATGATTTTCATAATCCTACAATTCCTCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAGAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTAGTCACTGGCACGATGCTTTAATAAAGATAGAGCGTATTTCATGGATCCTAAGCCCTCATGTAACTCTCTTAGCAGATGGTTCAACAAAAGTTCCAGAGGATGACCCTAAAGTATATGTTTCAAAGGAAGAAGATCCTGAAAACTGGCATGTTCAGATTTTTCGATCCATCGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCTGAGTCGCAGAACCTTGTTTGTGCAAAAAACTTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCACAACATTTTATTTATATTGAAAATCAGTATTTTATTGGATCATCATATGGATGGCCGGGATATAAAAATGCCGGGGCTGACCATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCTGAGGGAGATCCGAATAGCGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGCACCCTCTGGACTTTCTAAATTTTTACTGCCTTGGCAAACGGGAAGAAATTCCTGAGAATGGGCCGACCACTGACGATGCAACGGTATGTAATTCACTAAAACATCGACGGTTTATGATTTACGTTCATGCCAAGGGGATGATAGTAGATGATGAATATGTTATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAAGACACCGAGATAGCCACAGGTGCATATCAGCCGCATCACACGTGGGCGAAGAAAAAGAAACACCCACGTGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTCAATCCATGTTTCAAGGAGCCAGAAACTTTGGAATGTGTCAGAAAAGTCAATGGGATTGCTGAGGATAACTGGAACAGATTCGCAGCCGATGAATTCACGACATTACAGGGCCACCTTCTCAGGTATCCGGTGCTCGTGGATGGTGACGGAAAAGTCAGCCCTCTACCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACTACATAA 2574 44.33 MAESLEEVYLHGDLDLKIFEAVELPNMDIVSERLRRCFTACGTLDYSAIKSVGTNSRSAAGEGKVHHGRGKIITSDPYVTVRVPQATVARTRVIKNSQNPYWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQKIASGETISGWHTVIGSNGKPPKRGTSLRIEMKFTSVEENPVYRHGIAGDPQHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPHIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICVLSPRYASGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGAKAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCRRISHWHDALIKIERISWILSPHVTLLADGSTKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPLDFLNFYCLGKREEIPENGPTTDDATVCNSLKHRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPRGQIYGYRMSLWSEHLGMLNPCFKEPETLECVRKVNGIAEDNWNRFAADEFTTLQGHLLRYPVLVDGDGKVSPLPGHENFPDVGGKIIGSHSTAIPDVVTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4495939 4503975 - Lsi01G005630.1 Lsi01g00563 653221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00563 857 SUPERFAMILY Phospholipase D/nuclease 553 787 - -
Lsi01g00563 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Lsi01g00563 857 Gene3D Endonuclease Chain A 526 752 - -
Lsi01g00563 857 SMART pld_4 702 729 IPR001736 GO:0003824
Lsi01g00563 857 SMART pld_4 357 392 IPR001736 GO:0003824
Lsi01g00563 857 SUPERFAMILY Phospholipase D/nuclease 196 461 - -
Lsi01g00563 857 Gene3D Endonuclease Chain A 228 466 - -
Lsi01g00563 857 Gene3D C2 domain 11 184 IPR035892 -
Lsi01g00563 857 SMART C2_3c 13 151 IPR000008 -
Lsi01g00563 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Lsi01g00563 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi01g00563 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Lsi01g00563 857 Pfam C2 domain 12 153 IPR000008 -
Lsi01g00563 857 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Lsi01g00563 857 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Lsi01g00563 857 PANTHER PHOSPHOLIPASE D DELTA 5 857 - -
Lsi01g00563 857 Pfam Phospholipase D C terminal 778 846 IPR024632 -
Lsi01g00563 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Lsi01g00563 857 CDD C2_plant_PLD 8 175 - -
Lsi01g00563 857 PANTHER PHOSPHOLIPASE D 5 857 IPR015679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00563 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101217251 1678.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00563 Lsi-Chr1:4495939 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi07g01376 Lsi-Chr7:20013246 Lsi01g00563 Lsi-Chr1:4495939 0 transposed
Lsi09g01919 Lsi-Chr9:28031240 Lsi01g00563 Lsi-Chr1:4495939 0 transposed
Lsi01g00563 Lsi-Chr1:4495939 Lsi08g01289 Lsi-Chr8:21243604 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
Lsi02g02718 CCT,ECH 6 826 Phospholipase D Gene Family (Wang group) AT3G15730 80.9 0.0e+00 1408.7
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT3G15730 73.2 0.0e+00 1151.3
Lsi08g01204 . 45 851 Phospholipase D Gene Family (Wang group) AT3G15730 64.4 0.0e+00 1116.7
Lsi02g02718 CCT,ECH 1 826 Phospholipase D Gene Family (Wang group) AT1G52570 80.3 0.0e+00 1402.9
Lsi07g00464 CCT,ECH 1 683 Phospholipase D Gene Family (Wang group) AT1G52570 73.3 0.0e+00 1155.6
Lsi08g01204 . 91 851 Phospholipase D Gene Family (Wang group) AT1G52570 66.7 0.0e+00 1123.6
Lsi08g01204 . 116 851 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 4.0e-305 1043.9
Lsi02g02718 CCT,ECH 91 826 Phospholipase D Gene Family (Wang group) AT5G25370 63.6 1.9e-291 998.4
Lsi07g00464 CCT,ECH 3 683 Phospholipase D Gene Family (Wang group) AT5G25370 59.8 1.4e-262 902.5
Lsi07g00563 . 29 759 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.6e-269 924.1
Lsi09g01919 . 129 1095 Phospholipase D Gene Family (Wang group) AT2G42010 71.0 0.0e+00 1431.8
Lsi07g01376 . 28 870 Phospholipase D Gene Family (Wang group) AT2G42010 63.1 0.0e+00 1154.8
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 52.6 5.1e-264 907.9
Lsi09g01919 . 329 1095 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1258.4
Lsi07g01376 . 82 870 Phospholipase D Gene Family (Wang group) AT4G00240 62.0 1.9e-302 1035.0
Lsi01g00563 . 71 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 4.1e-252 867.8
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11850 69.4 0.0e+00 1217.6
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11850 61.1 0.0e+00 1098.2
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11850 52.0 1.1e-255 879.8
Lsi09g01919 . 258 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.4 2.2e-248 855.1
Lsi07g01376 . 12 656 Phospholipase D Gene Family (Wang group) AT4G11830 56.0 6.6e-216 747.3
Lsi09g01919 . 249 1095 Phospholipase D Gene Family (Wang group) AT4G11840 65.2 0.0e+00 1151.0
Lsi07g01376 . 7 870 Phospholipase D Gene Family (Wang group) AT4G11840 58.5 1.4e-303 1038.9
Lsi01g00563 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.6 7.0e-250 860.5
Lsi01g00563 . 1 693 Phospholipase D Gene Family (Wang group) AT4G35790 70.3 1.5e-298 1021.9
Lsi08g01289 . 618 1379 Phospholipase D Gene Family (Wang group) AT4G35790 59.0 5.2e-267 917.1
Lsi09g01919 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.5 8.3e-196 680.6
Lsi09g01456 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.7 0.0e+00 1473.0
Lsi11g00608 . 469 1456 Phospholipase D Gene Family (Wang group) AT3G16785 58.0 0.0e+00 1116.3
Lsi09g01456 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.8 0.0e+00 1325.1
Lsi11g00608 . 482 1573 Phospholipase D Gene Family (Wang group) AT3G05630 59.5 0.0e+00 1246.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001558 0 7 3 2 2 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 3 2 2 2 4 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00563 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 3.263489 2.799957 2.522873 0.0 0.0 0.0