Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00567 ATGTTATCCAGCTTGATGAACTTTCTGAAGGCTTGCTGGGTCCCGTCCTCGGACAATATCGTACACAGCGGTTCGGATTCAGCAGGCCGTCATGAAGGCTTACTATGGTACAAGGATATTGGACAGCACATGAATGGTGAATTTTCAATGGCTGTCGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTCCAGCATCTAAAAAGGTTCGCCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACGGAGGAAGGATTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTGCATGCTGCCTGGTTGGTGTGATCTGTGATGCCACCCTTTACATAGCTAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTTGTGCGGTCGACCGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAACGTGAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCGGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCGGTGTATGAGCTTCAACCACATGATCAATTCATCATATTTGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAGGCTGTAGATATGATTCGAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAAGCGAGCTCGGTCCGAGGCCCAACCACATCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTGAACACAGGCTGATGAATTGGTCGACTCTTGTTCTAGCTGTCATGCAAGTACCAAGTGCTGGGTCTTCAGAACTGCCATGGCCGAATCAGCAATGA 1209 46.32 MLSSLMNFLKACWVPSSDNIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLKRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGACCLVGVICDATLYIANLGDSRAVLGRLVRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDMIRNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGSELGPRPNHIFERVWRYLTYKISSSLCHTYRTEHRLMNWSTLVLAVMQVPSAGSSELPWPNQQ 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4537651 4540553 - Lsi01G005670.1 Lsi01g00567 653225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00567 402 Gene3D - 37 345 IPR036457 -
Lsi01g00567 402 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 342 - -
Lsi01g00567 402 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Lsi01g00567 402 SUPERFAMILY PP2C-like 56 320 IPR036457 -
Lsi01g00567 402 CDD PP2Cc 48 319 IPR001932 -
Lsi01g00567 402 PANTHER ALPHABET, ISOFORM E-RELATED 6 342 - -
Lsi01g00567 402 ProSiteProfiles PPM-type phosphatase domain profile. 47 402 IPR001932 -
Lsi01g00567 402 Pfam Protein phosphatase 2C 80 326 IPR001932 -
Lsi01g00567 402 SMART PP2C_4 41 320 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00567 Lsi-Chr1:4537651 Lsi11g01215 Lsi-Chr11:20727281 0 dispersed
Lsi01g00567 Lsi-Chr1:4537651 Lsi10g00506 Lsi-Chr10:7237062 0 wgd
Lsi01g00567 Lsi-Chr1:4537651 Lsi07g01082 Lsi-Chr7:16190074 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00567 K01102 - csv:101219696 650.588