Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00571 ATGGCGTCGACATTCAGTTCCGGCGCCCAATTGCTTCTGTTTCTTTCTGTTTTCCTTCTCGCCGGGGAGCCGAGGAGTGGCCATGCGGCTTCCTTTAAGTTCATTATCCACCATCGATTTTCGGATTCGATTAAGGAGATTTTAAACTCTGAGGGTTTACCGGAGAAACACACCCCTGAGTATTATGCGACTATGGTCCACCGCGATCGACTACTTCACGGCCAGCGATTGGCCACCAACAACGGCGATACGTCGCTGATGTTCCCTTATGGGAACGAGACCTACAACATTGGCGGTTTGGGACATTTGTACTATGCCTATATGTCGATCGGAACACCGGGCCGATTTTTCTTAGTGGCTCTGGACACTGGAAGCGATTTGTTCTGGTTACCCTGTGAATGCACCAAATGTCCTACTTATTTGACTAAAATGGATGGGACAAAATTTTGGTTGAATCATTACAGTCCAAATGCTTCAACAACTAGCACAAATGTACCTTGCAGTAACTCTTTGTGCGAGCTTGCAAACCAGTGCACTTCAAACAAAAGTACTTGTCCTTACAAAACTCATCACCTGTCTCCCAATACTTCATCTGCTGGGTACTTAGTACAGGACATATTGCACTTGCCCGCTGATGATTCACAAGTCAAACCTGTTGATATGAAGATTACTTTAGGATGTGGTAAGGTCCAGACTGGTATATTTTCAAATATTGCAGCTCCCAATGGTCTTATTGGGCTTGGCATGGGAAAGATATCGGTTCCGAGCTTCTTAGCAAGCCAAGGGCTTCCAGATTCATTTTCCATGTGTTTTGGATATGATGGTCTTGGGAGAATCGATTATGGAGATATAGGCCCATTAGACCAGAAAGAAACACCCTTCAATCCCATGTCTTTATCCTACAATGTCACCATCATTCAGATAATTGTGGCAACAAGACCCAGTAATGTTGAATTTTCTGCGATTATCGACACCAGTTTCTCTTTTACATACCTAACTGACCCCATTTACTCTCTTATTACTAAGAAAATGGATGCAGCTATGAAATTAGACCGCATTACGTTGGATTCTGATTACCCATTTGAGTACTGCTACCAACTTCCTCTAAAAACAATCACTTTAGCACCGACTTTGAATTTTACAATGAAGGGTGGATACAATTTTGGCGCTATTACTCCGTTTGTTAGTATTGCTACTGATGATATGGGTGGAAGTGCCGTTTGTCTAGCCATTTTCAAAGGCACTAATATGAATATAATTGGACACAACCTCTTGATTGGTCATCGCATTGTCTTCAATCGTGAAAAAATGGTGTTGGGATGGAAGGAAATAGATTGTGATTACAATGTATTTATTCTTCACTTCAGGCTTACATATTTCTATCGTTACAACCTAATCCTAACTAGTTATGCGAGTGTCATGGCCTCCTTTGTTGTGGTGCTATTCTCACACTTTGCCATTCTTTTGCTGTCTGTTTTGTCTTTGGGGAGTTCACTGAGCTTAGACTACTATGAGAAGACATGCCCCGGTGCCGACTTTATTGTTACTAAAGCTGTCAAGGAGGCAGCTTACAAAGATAAGACTGTCCCTGCTGCGCTCCTCCGGATGCACTTTCACGACTGCTTTATTAGGGGTTGTGATGCATCTGTACTGCTGAATTCAGTAGGGAACAACAAAGCAGAGAAAGATGGGCCACCTAATTTGTCTTTGCACTCGTTTTTTGTGATCGACAACGCGAAGAAAGAACTGGAATCTTATTGCCCCGGTGTTGTCTCTTGTGCTGATATCTTGGCTCTGGCTGCAAGGGATGCAGTTGTGCTTTCTGGAGGTCCAACATGGGATGTTCCTAAAGGGAGAAAGGATGGAAGGATATCAAAGGCTAGTGAAACAATACAATTGCCATCTCCAAGCTTCAACATTTCTCAGCTGCAACAAAGCTTCTCACAAAGGGGATTATCCTTGGACGACCTAGTTGCTCTTTCAGGAGCACACACCTTAGGATTTGCTCATTGCTCATCCTTTCAAGGTAGAATCCGCAACTTCAGTCCAGCCAGCAACGTCGACCCTGAAATGAATCCATCCTTTGCAGCAAGTCTAAGAAACATGTGCCCAGTAAACAACAAGGCAAAAAATGCTGGCTCTAACATGGATACTTCTCCAACCACATTTGACAACAATTACTACAGACTGATACTCCAAAAGAAGGGCCTGTTTTCTGCTGATCAAGCTCTGCTCAACTTTCCTAAGACCAATAATCTTGTTTATAAGTTTGCAAGCTCAAAGGAAGCTTTTAACCGTGCATTTGTTAATTCTATGATCAAGATGAGTAGCATCACTGGAGGTCAGGAGATCAGGAAGAATTGTAGGGCAGTGAACTAA 2379 43.0 MASTFSSGAQLLLFLSVFLLAGEPRSGHAASFKFIIHHRFSDSIKEILNSEGLPEKHTPEYYATMVHRDRLLHGQRLATNNGDTSLMFPYGNETYNIGGLGHLYYAYMSIGTPGRFFLVALDTGSDLFWLPCECTKCPTYLTKMDGTKFWLNHYSPNASTTSTNVPCSNSLCELANQCTSNKSTCPYKTHHLSPNTSSAGYLVQDILHLPADDSQVKPVDMKITLGCGKVQTGIFSNIAAPNGLIGLGMGKISVPSFLASQGLPDSFSMCFGYDGLGRIDYGDIGPLDQKETPFNPMSLSYNVTIIQIIVATRPSNVEFSAIIDTSFSFTYLTDPIYSLITKKMDAAMKLDRITLDSDYPFEYCYQLPLKTITLAPTLNFTMKGGYNFGAITPFVSIATDDMGGSAVCLAIFKGTNMNIIGHNLLIGHRIVFNREKMVLGWKEIDCDYNVFILHFRLTYFYRYNLILTSYASVMASFVVVLFSHFAILLLSVLSLGSSLSLDYYEKTCPGADFIVTKAVKEAAYKDKTVPAALLRMHFHDCFIRGCDASVLLNSVGNNKAEKDGPPNLSLHSFFVIDNAKKELESYCPGVVSCADILALAARDAVVLSGGPTWDVPKGRKDGRISKASETIQLPSPSFNISQLQQSFSQRGLSLDDLVALSGAHTLGFAHCSSFQGRIRNFSPASNVDPEMNPSFAASLRNMCPVNNKAKNAGSNMDTSPTTFDNNYYRLILQKKGLFSADQALLNFPKTNNLVYKFASSKEAFNRAFVNSMIKMSSITGGQEIRKNCRAVN 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4568992 4579851 + Lsi01G005710.1 Lsi01g00571 653229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00571 792 Gene3D Acid Proteases 288 447 IPR021109 -
Lsi01g00571 792 Gene3D - 502 792 - -
Lsi01g00571 792 Pfam Xylanase inhibitor C-terminal 318 442 IPR032799 -
Lsi01g00571 792 ProSitePatterns Peroxidases proximal heme-ligand signature. 656 666 IPR019793 -
Lsi01g00571 792 SUPERFAMILY Acid proteases 100 447 IPR021109 -
Lsi01g00571 792 Gene3D Acid Proteases 79 283 IPR021109 -
Lsi01g00571 792 Pfam Peroxidase 516 760 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 508 527 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 532 552 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 590 600 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 714 729 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 655 667 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 571 584 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 609 624 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 730 747 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Plant peroxidase signature 770 783 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PANTHER PEROXIDASE 25-RELATED 483 791 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 Pfam Xylanase inhibitor N-terminal 104 271 IPR032861 -
Lsi01g00571 792 ProSiteProfiles Plant heme peroxidase family profile. 498 792 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PANTHER PEROXIDASE 483 791 - -
Lsi01g00571 792 ProSiteProfiles Peptidase family A1 domain profile. 104 442 IPR033121 -
Lsi01g00571 792 PRINTS Haem peroxidase superfamily signature 591 608 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Haem peroxidase superfamily signature 716 731 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Haem peroxidase superfamily signature 609 621 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Haem peroxidase superfamily signature 530 544 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 PRINTS Haem peroxidase superfamily signature 656 671 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 119 130 IPR001969 GO:0004190|GO:0006508
Lsi01g00571 792 SUPERFAMILY Heme-dependent peroxidases 499 792 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi01g00571 792 CDD secretory_peroxidase 502 791 IPR033905 GO:0004601|GO:0042744
Lsi01g00571 792 Gene3D Peroxidase, domain 2 634 775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00569 Lsi-Chr1:4552578 Lsi01g00571 Lsi-Chr1:4568992 3.92E-124 dispersed
Lsi01g00571 Lsi-Chr1:4568992 Lsi08g01301 Lsi-Chr8:21380032 2.54E-144 dispersed
Lsi01g02037 Lsi-Chr1:28112257 Lsi01g00571 Lsi-Chr1:4568992 7.43E-35 dispersed
Lsi09g00955 Lsi-Chr9:12438867 Lsi01g00571 Lsi-Chr1:4568992 1.10E-08 dispersed
Lsi01g00570 Lsi-Chr1:4563462 Lsi01g00571 Lsi-Chr1:4568992 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00571 K00430 - csv:101220644 700.664