Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00581 ATGACAAGGGTGGAGATAAAAGTGAAGATGGATTGCGAGGGGTGCGAAAAGAAGGTGAAAAAATCGGTGGAGGGAATGAAAGGTGTGACGGAGGTGGAGGTGGAGCCGAAGCGGAGCAAGCTGACGGTGGTGGGTTACGTGGATCCCAACAAGGTTCTGCACCGGGTCCGCCATCGGACCGGGAAGACGGCGGAGCTCTGGCCGTATGTCCCGTACGACGTCGTTGAACACCCTTACGCGCCTGGAGCCTACGACAAGAAGGCGCCGCCTGGGTACGTGCGGAATGTCGCGGCCAACCCGGAGGTGGCGCCGCTTGCACGTGCCGGATCCTTCGAGGTTAAATACACCACCGCCTTCAGCGACGAGAATCCCAATGCTTGCTCTCTAATGTAA 393 58.52 MTRVEIKVKMDCEGCEKKVKKSVEGMKGVTEVEVEPKRSKLTVVGYVDPNKVLHRVRHRTGKTAELWPYVPYDVVEHPYAPGAYDKKAPPGYVRNVAANPEVAPLARAGSFEVKYTTAFSDENPNACSLM 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4637937 4639490 + Lsi01G005810.1 Lsi01g00581 653239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00581 130 CDD HMA 5 65 IPR006121 GO:0046872
Lsi01g00581 130 ProSiteProfiles Heavy-metal-associated domain profile. 10 57 IPR006121 GO:0046872
Lsi01g00581 130 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 130 IPR045181 GO:0046872
Lsi01g00581 130 SUPERFAMILY HMA, heavy metal-associated domain 2 68 IPR036163 GO:0046872
Lsi01g00581 130 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 27 2 130 - -
Lsi01g00581 130 Pfam Heavy-metal-associated domain 7 62 IPR006121 GO:0046872
Lsi01g00581 130 Gene3D - 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00581 - - - csv:101219619 255.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00581 Lsi-Chr1:4637937 Lsi11g01201 Lsi-Chr11:20499496 1.91E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1159 . . . . . . . . . . . Cma07g00412 . Car07g00362 . Cpe19g00872 . . . . . . . . Cla01g01995 Cam01g2093 Cec04g1751 Cco04g1816 Clacu01g2111 Cmu01g1988 Cre04g1664 . . . . Lsi01g00581 . . Cme08g00951 . . . . . . . . . . Cmo07g00407 . . . . . . . . . . . . . . . . . . . . . Csa06g03349 Chy02g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013554 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00581 Lsi_Chr01 FPKM 13.575397 12.886821 12.549921 11.963731 9.768116 9.437677 9.17592 30.725435 29.183168 33.788837