Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00582 ATGACGAAGAAGGAGAACAATCTGGTTTTACTATCGTCGGATGAAGAATACTGTGGTGGTCGATCATCCACTTCAAAACGCAGATATCGAAAGACGAAGTCGCAATCACCACTACCTCGGAAGAGCATTCGCCAAGCGAAGAAGGCTCGACTCCTAGGTTCTCGGTCTTGCTTGCAGAAGGATTCCCGCAATGTTGACGAGTTCAACTTATTTTGTGAAGATTTTGATCAAGTCTTTTCTACCTTCAAGGTATCTGCTGGTTCTGGGAGCGTTTGCAGAAATGAATTATGGATTGATAAATACAGACCGCATTCATTGGAAGAGCTTGCTGTACACAAAAAGAAGGTAGAAGAAGTTAAGGTATGGTTTGAAGAAAGGTTGAGGACACCTAAGGATGCTAATGGAAATAATGTTCTTGTCATCACTGGTCCTGCTGGAGTTGGGAAATCTGCAACTGTTCATGTAATAGCATCTCATCTTGGAGCCAGATTATGTGAATGGGACACACCTACTCCTGTGATTTGGCAAGAACATCTGCATAACTCGACTGCAGGGATACAGTACACATCTAAACTGGATGAGTTTGAAAGTTTTATTGAGAGAATGAGGAAGTATGGAGTAATACCTTCATGCTTTCCCATAGACGACTCCAAACAACCTGTTATACTCTTAATAGATGATCTTCCTTTGACCAATGGGAAGGCTGCTCTTAGAAGACTTCAGAACTGTTTGCATCTTTATGTGCAATCAACTCAAGTTCCAACAGCCATTGTGATTACAGATTGTGCTAAAGCCGAAACAACAGACCTCACTGTGCGTTACTTGGAAGAGATTCAGCTCTGTTTTGAGAATGCTGGGGCTTGTAAGGTTGCATTCAATCCTATAACGAATAACTCCATTAAAAAGATAATTTCTAGAATTTGTTCTCAAGAACAGTACAATCTGGCAGTTGAACAAATTGATGCAATAGCCCAATCAAGTGGTGGTGATGTGAGACATGCAATCATGTCTTTACAATTATTTTGCCTGAAACCAAGTCAGATATGTTCATCATCATCCAGTGCTCCAGAATTTTCAAAAGATGAAGAGCTGCCTCCTACAGTGGTGGATGATCGATTCTCGTTTCAATTTGGCCGTGATGAGACTCTCTCCTTATTTCATGCCCTGGGAAAATTTTTGCATAACAAAAGACAGAGTATAAACGAATTGGTATTAGACAGTGAGTTTTCCGTTCAAGAAAGTTTATTAAGACGGCCACTTAATATGGATCCTCCAGAAAAGATTCTATGTCAAGCACATGGGCAAGCCAGGCCCATTGCTGATTTCCTGCATGAAAATGTTCTTGACTTCATGAATGAGGAAGCTGTGGATGATGCATGGGTTGTGGCTTCGTATTTAGGTGATGCTGACACACTCCTTTCTTCTTACGAGGGAATGCTAGCCAGACATAATGATGCGGAAAATATTCCACACCTGGCTGCGGCTTCAGTTGCGGTCCGTGGGGTATTATTTGGCAATTCTCATCCATTGTCTTCCAGGTGGCATGCTATTCGTAGACCCAAGCTTTGGCAAATCGATGGGTCCTCATCCTTCAATAAGAAGGAGATGATAAAACAAAGATTTATTGCTTATGGTGGGATCAGTTTACCTCATTTTTCAGTAGTTGCCACCGAGTACGTACCTGCATTGAAGTGGCTTGGTAGTAGTGCATCCGGAGATCATGAAAATTTACGGGTATTGACAGAAGAAAATACAGATCAGATTTTGACAGAAGAAAGTCATACTTCTGACGAAGAAATTGAAGATTGGTAA 1812 41.39 MTKKENNLVLLSSDEEYCGGRSSTSKRRYRKTKSQSPLPRKSIRQAKKARLLGSRSCLQKDSRNVDEFNLFCEDFDQVFSTFKVSAGSGSVCRNELWIDKYRPHSLEELAVHKKKVEEVKVWFEERLRTPKDANGNNVLVITGPAGVGKSATVHVIASHLGARLCEWDTPTPVIWQEHLHNSTAGIQYTSKLDEFESFIERMRKYGVIPSCFPIDDSKQPVILLIDDLPLTNGKAALRRLQNCLHLYVQSTQVPTAIVITDCAKAETTDLTVRYLEEIQLCFENAGACKVAFNPITNNSIKKIISRICSQEQYNLAVEQIDAIAQSSGGDVRHAIMSLQLFCLKPSQICSSSSSAPEFSKDEELPPTVVDDRFSFQFGRDETLSLFHALGKFLHNKRQSINELVLDSEFSVQESLLRRPLNMDPPEKILCQAHGQARPIADFLHENVLDFMNEEAVDDAWVVASYLGDADTLLSSYEGMLARHNDAENIPHLAAASVAVRGVLFGNSHPLSSRWHAIRRPKLWQIDGSSSFNKKEMIKQRFIAYGGISLPHFSVVATEYVPALKWLGSSASGDHENLRVLTEENTDQILTEESHTSDEEIEDW 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4641723 4651344 + Lsi01G005820.1 Lsi01g00582 653240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00582 603 Gene3D - 94 280 IPR027417 -
Lsi01g00582 603 CDD AAA 117 259 - -
Lsi01g00582 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 343 IPR027417 -
Lsi01g00582 603 CDD HLD_clamp_RFC 295 348 - -
Lsi01g00582 603 MobiDBLite consensus disorder prediction 17 42 - -
Lsi01g00582 603 MobiDBLite consensus disorder prediction 24 42 - -
Lsi01g00582 603 Pfam Rad17 P-loop domain 93 266 - -
Lsi01g00582 603 Gene3D - 296 358 - -
Lsi01g00582 603 MobiDBLite consensus disorder prediction 582 603 - -
Lsi01g00582 603 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 58 591 - -
Lsi01g00582 603 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 58 591 IPR004582 GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00582 K06662 HRAD17, RAD24; cell cycle checkpoint protein - csv:101219861 1061.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00582 Lsi-Chr1:4641723 Lsi10g01127 Lsi-Chr10:15509515 8.36E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1149 . . . . . . . . . . Cma03g00670 . Car03g00616 . Sed10g1021 . Cpe10g00678 Bhi03g00837 Tan03g2102 Cmetu04g0142 . Hepe04g1610 . . Cla01g01994 . Cec04g1750 Cco04g1815 Clacu01g2110 Cmu01g1987 . . Cone12ag0825 Cone6ag1694 Cone9ag1618 Lsi01g00582 . . Cme08g00950 . Blo06g00275 . . Bpe10g00166 . . . . Cmo03g00695 . . . . . . . . . . . . . . . . . . . . . . Csa06g03348 Chy02g00553 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009016 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00582 Lsi_Chr01 FPKM 6.575438 6.967826 8.407215 11.461182 5.538389 5.487875 6.689409 19.971577 21.041264 28.422291