Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00583 CCACCGTCATCGGAATGTGGAGGTCGGTGGAAGATCGGAAGTAGAAAGCCGCCGGAGTTTTGTTCTGTTCTTGAAAAATTTTGGCCAAAGAAGCTCAAAAGGGAAGAAGCTATGGGTTGCTGTTACTCGAGACTAGAAAGAGAAGAAACTGTGTCGAGGTGCAAAGCAAGAAAGAGGTACATGAAACAGTTGGTGAAGGCGAGGCAAGCTTTTTCTGCTTCTCACAGCTTGTACATTCGTTCTCTTCGTGGCACCGGCGCCGCTCTCCGGCAGTTTTCCAATGCAGAGACCTACATTCGCCGCCCTCAGCAGCAGCAGCAGCAGCAGAACTACCACCACCACCTCCCGCCGGTGCTTCCATCTCCAACCCCACGAACGCCGCCGCCTCCTCCGCCTCCTCATATCCCCATGAGTCCTAGTTCCGACACCTGGACATCGATCACGGCCTCCCCGGCACTACCTCCGCCGCCGCCGCCGCCACCGTCATCCACTTGGGATTTCTGGGACCCTTTTGTGCCGTCGACATCTCGCACTGTGACTGAGGAAGAATGGGAGGCTACCACCATTGCATCAGAGGCTATAGTCACTGTAACAGGGGCGGCTAGCTCAGCACCGCCGCCGTCAGTGGTGAGTGGTTTTTCAAAGGACACTTCAAGCACTGAGCTTGCTATGGTAGTGTCGAGGAACACCAAAGATCTGGTGGAGATTATTAAGGAGCTTGATGAGTACTTTCTCAAAGCTGCTGATGCTGGTGCTCAGCTCTCCTTGCTTTTGGAAGTCCCCACTTTTTCTCCTCAGAATAAAGGAGGGCAGGCTTACAGTAATGGGTGGAGCTTGAGCCCTTCATTGAGGGTGTGGGGTTCAAACACAAAACCAAATGATGCATTTGGTAAGTTAAACGGAGAAATAACAGCAACAAATATGGGAAATGGGTGTGGTGGAAATAGCAGCAGCCACTGTTCAACAGTGGAGAAGCTGTACGCTTGGGAGAAAAAACTGTACCAAGAGGTCAAGGCATTGAAGAACGGAGTTGTGGAATTCTATACTGCCGAGGCCACAAGGATAGAGCATGAGAAGAAGGTGGAACAGTTGAGGAAGCTAGAGCTGAAGAGGGCTGACTATGTAAAGACTGAGAAGACTAAGAAAGAAGTTGAAAAGCTGGAGTCACAGATGATGGTTGCTTCTCAGGCCATTGAAACCACATCTGCTGAAATCATCAAGCTAAGAGAAATTGAACTCTATCCACAACTCCTTGAGCTTGTCAAAGGATTGATGTGCATGTGGAGAAGTATGTACGAGTCTCATCAGGTCCAAACACACATTGTTGAACAGCTCAAATATCTAAATATCATACCATCTGCCGAGCCCACATCCGAGATCCACCGCCAATCAACTCTCCAGCTTGAGCTTGAAGTCCAGCAATGGCATGCCTCTTTTTGCAATCTAGTGAAAGCTCAACGGGATTATGTCCAGTCTCTTACAGGCTGGCTACGGCTTTGCCTTTTCCAGATAAGTGGAAACCCATTGTTAAGAACAGGTCAAGATTCTAGAATTTACTCACTGTGTGAAGAATGGAACCTCGCAGTTGATAGGATTCCAGACAAAGTGGCTTCTGAAGGAATCAAGAGCTTCTTAACCGTAGTTCATGCCATTGTTGTTCAACAAGCTGAGGAATATAGGCAAAAGAAGAAGGCAGATTCTGCCTCAAAAGAGCTTGACAAGAGAGCTTCTGAGCTAAGATCACTAGAAAGCAAATATGTCTCACATTCAATGCGAGAATGCTCGGCATCAACAAGAGGGAGAGACCCAGTTCAGGAGAAGCAAAACAAGGTGGAGAATTTAAGAACAAAAGCTCGAGACGAGAAACAAAAGCATGAAAACTTAGTCAGTGTGACAAGGTCAATGACGATAAATAACTTGCAGATGAGTTTTCCCCATGTTTTCCAGGCAATGGTTGGGTTTTCCAGTGTATGTATGCACGCATACGAGGCAGTTTATAATCAAACTAAAAATACTGACCAGCATGAGGTGAAGAGATTACTACCTTAA 2049 47.49 PPSSECGGRWKIGSRKPPEFCSVLEKFWPKKLKREEAMGCCYSRLEREETVSRCKARKRYMKQLVKARQAFSASHSLYIRSLRGTGAALRQFSNAETYIRRPQQQQQQQNYHHHLPPVLPSPTPRTPPPPPPPHIPMSPSSDTWTSITASPALPPPPPPPPSSTWDFWDPFVPSTSRTVTEEEWEATTIASEAIVTVTGAASSAPPPSVVSGFSKDTSSTELAMVVSRNTKDLVEIIKELDEYFLKAADAGAQLSLLLEVPTFSPQNKGGQAYSNGWSLSPSLRVWGSNTKPNDAFGKLNGEITATNMGNGCGGNSSSHCSTVEKLYAWEKKLYQEVKALKNGVVEFYTAEATRIEHEKKVEQLRKLELKRADYVKTEKTKKEVEKLESQMMVASQAIETTSAEIIKLREIELYPQLLELVKGLMCMWRSMYESHQVQTHIVEQLKYLNIIPSAEPTSEIHRQSTLQLELEVQQWHASFCNLVKAQRDYVQSLTGWLRLCLFQISGNPLLRTGQDSRIYSLCEEWNLAVDRIPDKVASEGIKSFLTVVHAIVVQQAEEYRQKKKADSASKELDKRASELRSLESKYVSHSMRECSASTRGRDPVQEKQNKVENLRTKARDEKQKHENLVSVTRSMTINNLQMSFPHVFQAMVGFSSVCMHAYEAVYNQTKNTDQHEVKRLLP 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4647352 4650847 - Lsi01G005830.1 Lsi01g00583 653241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00583 682 PANTHER UNCHARACTERIZED 38 670 - -
Lsi01g00583 682 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, PUTATIVE (DUF632)-RELATED 38 670 - -
Lsi01g00583 682 MobiDBLite consensus disorder prediction 150 166 - -
Lsi01g00583 682 MobiDBLite consensus disorder prediction 100 169 - -
Lsi01g00583 682 Pfam Protein of unknown function (DUF630) 38 96 IPR006868 -
Lsi01g00583 682 MobiDBLite consensus disorder prediction 100 114 - -
Lsi01g00583 682 Coils Coil 565 585 - -
Lsi01g00583 682 Pfam Protein of unknown function (DUF632) 233 549 IPR006867 -
Lsi01g00583 682 Coils Coil 350 370 - -
Lsi01g00583 682 Coils Coil 604 631 - -
Lsi01g00583 682 Coils Coil 377 404 - -
Lsi01g00583 682 MobiDBLite consensus disorder prediction 117 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00583 - - - csv:101220098 1098.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00583 Lsi-Chr1:4647352 Lsi09g01685 Lsi-Chr9:25301150 3.31E-11 dispersed
Lsi01g00583 Lsi-Chr1:4647352 Lsi02g02785 Lsi-Chr2:34100079 2.13E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1147 . . . . . . . . . . Cma03g00671 Cma07g00413 Car03g00617 Car07g00363 . Cpe19g00870 Cpe10g00677 Bhi03g00838 . . . . . . Cla01g01993 Cam01g2092 Cec04g1749 Cco04g1814 . Cmu01g1986 Cre04g1663 Cone8ag0861 Cone12ag0824 . . Lsi01g00583 . . Cme08g00949 Blo05g00705 . . . . Bpe06g00133 . . . Cmo03g00696 Cmo07g00409 . Cma20g00739 . . . . . . . . . . . . . . . . . . . Csa06g03347 Chy02g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007876 1 3 1 1 1 1 2 1 1 1 1 0 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00583 Lsi_Chr01 FPKM 11.029654 13.051752 10.024466 11.322435 7.896177 8.570786 9.175774 21.360821 20.317461 22.633209