Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00584 ATGGCGCCTCCCAGAGTCGATGCTGCGTACCTCAAGGAAATCGAGAAGGCCCGTAGAGACCTTCGCGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGTTTAGCGTGGCATGATGCTGGTACTTACGACGCTAAAACGAAAACCGGTGGTCCTGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTATCAGCTTGCTGGAGTTGTTGCTGTGGAGATCACCGGCGGGCCGGCCATTGACTTTGTCCCCGGAAGAAAGGACTCAAATTCAGTTCCAGAAGAGGGCCGCCTTCCAGATGCCAGCCACGTTTCTAAACCTTGTGCTTCCCATTTAAGAGAGATCTTTTACAGGATGGGACTAACTGACAAGGATATTGTGGCATTATCTGGAGGACACACATTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGATCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAATGACTCTCGATCTAAGGAACAACTATTGAAGCTTCCTTCAGACAAGGCTTTGCTCAAAGATCCTCGTTTTTCCGAATATGTGAAGGTATACGCAAAGGATGAAGATAAGTTCTTTGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTGGGCTTCTCTACACCTTCCACAGTTCTCAAGAGCAGAGCCTCCTCATGGGCAAATAAAATTCTGGTAGCTGCAATCGTAGCAGTTGTGGCGATACTGAGTTACAATAGAGCCATGTCGCCTAAGTGGAATGCCTTTCTTCCAACTCTCTTCTGA 900 46.11 MAPPRVDAAYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAKTKTGGPDGSIRFMDELNHTANKGLKIAVDFCETVKARHPKITYADLYQLAGVVAVEITGGPAIDFVPGRKDSNSVPEEGRLPDASHVSKPCASHLREIFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKNDSRSKEQLLKLPSDKALLKDPRFSEYVKVYAKDEDKFFEDYAASHKKLSELGFSTPSTVLKSRASSWANKILVAAIVAVVAILSYNRAMSPKWNAFLPTLF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4654101 4657907 + Lsi01G005840.1 Lsi01g00584 653242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00584 299 PRINTS Haem peroxidase superfamily signature 156 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 ProSiteProfiles Plant heme peroxidase family profile. 89 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 Pfam Peroxidase 18 231 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 CDD ascorbate_peroxidase 4 251 - -
Lsi01g00584 299 ProSitePatterns Peroxidases proximal heme-ligand signature. 156 166 IPR019793 -
Lsi01g00584 299 SUPERFAMILY Heme-dependent peroxidases 7 257 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 172 196 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 227 251 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PRINTS Plant ascorbate peroxidase signature 150 171 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lsi01g00584 299 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 2 284 - -
Lsi01g00584 299 Gene3D - 17 250 - -
Lsi01g00584 299 Gene3D Peroxidase, domain 2 130 243 - -
Lsi01g00584 299 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 2 284 IPR044831 GO:0004601|GO:0034599
Lsi01g00584 299 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00584 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101220337 469.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00584 Lsi-Chr1:4654101 Lsi02g01407 Lsi-Chr2:19338764 2.01E-108 dispersed
Lsi01g00584 Lsi-Chr1:4654101 Lsi11g01196 Lsi-Chr11:20441725 3.00E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1146 . . . . . . . . . . Cma03g00672 . Car03g00618 . . . . . . . . . . . . . . . . . . . . Cone6ag1693 Cone9ag1617 Lsi01g00584 . . . . Blo06g00285 . . . . . . . Cmo03g00697 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00555 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00584 Lsi_Chr01 FPKM 59.581089 64.055527 94.414017 97.967239 157.960968 160.718384 151.503616 102.00531 96.136528 90.167763