Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00585 ATGCTACAAGACATGTGGAACGCTCCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCTTCTTCTCCGGCCAAGCCTCTCGCCGTCTCCAGGCTCCGTCCCGATCCCTACCATGTCACTCACAAAGTTCCAGTTGGGGATACTCCCTATTTGGTAGCGAAGGATCCGGATAAGGCGATTCCTCTCTTTTGGGCCGCCATTAATGCGGGGGACAGAGTTGATAGTGCCTTGAAAGATATGGCCATTGTGATGAAACAGCAGAATCGAGCCGAAGAAGCAATCGAAGCGATTAAATCGTTGCGAAATCGGTGTTCTGATCAGGCTCAGGAGTCTCTGGATAATATTCTTCTCGATCTATACAAGAGATGTGGGAGATTAGACGACCAGATAGCTCTTTTGAAGCATAAACTGTTCTTGATTCAACAAGGTTTAGCGTTTAACGGTAAGCGGACTAAAACCGCCCGATCTCAAGGAAAGAAGTTCCAAGTTTCTGTTGAGCAAGAAGCAACTAGATTACTGGGGAATTTGGGATGGGCGCTGATGCAGCAAAACAATTATGTTGAAGCAGAAGATGCTTATAGGAAAGCACTTACAATTGCACCAGACAATAACAAAATGTGTAACCTTGGAATCTGTTTGATGAAACAAGGGAGAATTTCAGAGGCTAAAGAAAATCTACGTAGAGTTAAACCAGCAGTTGTAGATGGGCCAAGAGGCACAGATTCCCATCTCAAAGCTTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAGTCAGAAATGATGAATAGGGGAGGCGACAGGCTCGAACAAAGGCGGTTGTTCGACGCCTTTCTCGGTTCTTCGTCGATTTGGCAACCTCAGCCTTGCAAGGATCACACAACCTTACCAACATTGCCTGTTACAAATCCTGTTAGGACAATTCAAGATGATTTTGGTGATGAGAATATTGATATGAACTTGTTAGCAAACCAAATGGTTCCTCCTCCTCAACAACAGAAGTTTATCAAACAAGGTCAAGTTCAAGTTCCTTTAGGGAACTCATTGAATGTTGCTGCACAACCATTTTTTTCATCAAAATTTGTTAGTGAACCCATTAGTAAAGTCCCCTTGGGAAACCAATTTCCTGAAGGCTTGAAGAGAACAAGGTCTGGAAATGCAGCCAACTCAATGAGAGTAAATGATTTAATGGAAATAAAAAGGCCGTTTTTAGTAGAATTAGGGAGGCCAGAAACTAAGACAAGAAGGCCATCTCCTGCCTCTGAGGAGACAGATAAATGGGCAGAAATACTGCCTGATGACAATGACTTTGAAGAGGCTATTCTTGCTGCAGTTCTGGGATCAACAGATGATGAAGCAGAGAAGAAAACAACAAACAATGCCATCGTTGGCGGCGGCCGCCGCAGCTTAATTCAGAGGAAAATTGAGAAGAGGCTCAAGGTTTTTGAAGACATTACACTTTCCTTGAGTCCCAGAGCCTAA 1479 44.22 MLQDMWNAPPGFRPSKSAPSSPAKPLAVSRLRPDPYHVTHKVPVGDTPYLVAKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYVEAEDAYRKALTIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVVDGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQRRLFDAFLGSSSIWQPQPCKDHTTLPTLPVTNPVRTIQDDFGDENIDMNLLANQMVPPPQQQKFIKQGQVQVPLGNSLNVAAQPFFSSKFVSEPISKVPLGNQFPEGLKRTRSGNAANSMRVNDLMEIKRPFLVELGRPETKTRRPSPASEETDKWAEILPDDNDFEEAILAAVLGSTDDEAEKKTTNNAIVGGGRRSLIQRKIEKRLKVFEDITLSLSPRA 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4658463 4660239 - Lsi01G005850.1 Lsi01g00585 653243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00585 492 Coils Coil 82 109 - -
Lsi01g00585 492 Gene3D Tetratricopeptide repeat domain 48 264 IPR011990 GO:0005515
Lsi01g00585 492 ProSiteProfiles TPR repeat profile. 169 202 IPR019734 GO:0005515
Lsi01g00585 492 Coils Coil 239 259 - -
Lsi01g00585 492 SUPERFAMILY TPR-like 49 276 IPR011990 GO:0005515
Lsi01g00585 492 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 489 IPR044961 -
Lsi01g00585 492 Pfam Tetratricopeptide repeat 171 202 IPR001440 GO:0005515
Lsi01g00585 492 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 489 - -
Lsi01g00585 492 SMART tpr_5 169 202 IPR019734 GO:0005515
Lsi01g00585 492 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00585 - - - csv:101220568 887.871
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00585 Lsi-Chr1:4658463 Lsi02g00953 Lsi-Chr2:9511571 2.61E-83 dispersed
Lsi01g00585 Lsi-Chr1:4658463 Lsi05g01821 Lsi-Chr5:25494429 3.97E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1144 . . . Bda10g00208 . . . . . . Cma03g00674 . Car03g00619 . . Cpe19g00869 . . . . . . . . . . . . . . . . . . . Lsi01g00585 . . . . Blo06g00290 . . . . . . . Cmo03g00698 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00585 Lsi_Chr01 FPKM 8.9375 9.869723 7.129994 7.168391 9.922018 9.32588 10.263138 9.940618 9.856082 11.029211