Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00589 ATGGCCTCCCTCGATAGTGCCGGAGTCGTCACCGTCGAAGTCGAGACGGCCAAGAAGCTGCTCGATTCCAACTATGCTCTTCTGGACGTTAGGACTGTTGAGGAGTTCAAGAAAGGGCATGTGGCGACGGAGAAAATCGTCAATATTCCTTACCAGTTCAATTCTCCAAATGGAAACACGGCGGTGGGATTTTCAGGTGGGGTTAAAAATGATCGGTTTTTGGAGGAGACGTCGGCGGTCTTTAAGAAAGACGACCACTTCATCGTGGTTTGTGGAGGCGGTGGCAGGTCTCGACTTGCTGTTGCAGAACTTAAAGACCAACCTACCATACTGCGAAGCACCAGATTGCATTCTCTTTGGCTCAGGCAACAAGCAAAGAATTTGCAGGGAAGATCGAAGTGTTTGTGTAGCGCCAGATTTGTCTTCCATAGTTCTACCTCTTCAACCATGGTGCTCGAGGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGCGATTACGCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGGGTTCTTACAATGGCGGGAAAAGGCGTTCGTGTGCTGGTCACTCCCACTACCGACCTTGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAATTGGCCCTTAAGCATCGTCAGAACAAAAAGCAGCAACAGAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAAAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGATTTTGGCGAAGAAGATGATGGCAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAACAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGACGTCCTCATCAGTACTCCTATCTTTACTGGCGACGGGGAAGGTGGAAGTGGGTTTGCAGCAGCTGCTGCGGCTGCTGCTGCTGGTGGCGTATCTGGTTTTGATTTTGGGGTTGATCCCAACTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAGGCAGCTGCGAAAAAGGCTGCAGAGGAGAATACAAAGCAAGAGAAAGGAGCTGATCAGCCATCTGGCTCACAGGATGCAACTATGACCGAGCGTCCTGGTCTTGCGACTTCTGATGCCGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATGCACTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGCAGCATCAGACGATCCTGAGTTGGCACTTGCTCTTCAGTTGTCTGTGCAGGAAGGCTCCAGTGATTCGACAAGCTCGACAGATATGAGTAAATTGTTGGCCGATCAATCTTTTGTGTCTTCTATTCTTGCTTCACTTCCAGGCGTAGATCCAAATGATCCCTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCTGAGGATAAGAAAGATGAAGAAAAATCATCAAAGGATGACGAGAAATGA 1659 47.74 MASLDSAGVVTVEVETAKKLLDSNYALLDVRTVEEFKKGHVATEKIVNIPYQFNSPNGNTAVGFSGGVKNDRFLEETSAVFKKDDHFIVVCGGGGRSRLAVAELKDQPTILRSTRLHSLWLRQQAKNLQGRSKCLCSARFVFHSSTSSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGADQPSGSQDATMTERPGLATSDAENKAADLMDDENALLQQALAMSMDNPSATSDIRDIDMSEAASDDPELALALQLSVQEGSSDSTSSTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEDKKDEEKSSKDDEK 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4681807 4693514 - Lsi01G005890.1 Lsi01g00589 653247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00589 552 MobiDBLite consensus disorder prediction 389 407 - -
Lsi01g00589 552 MobiDBLite consensus disorder prediction 484 499 - -
Lsi01g00589 552 Pfam Ubiquitin interaction motif 373 386 IPR003903 -
Lsi01g00589 552 Pfam Ubiquitin interaction motif 441 454 IPR003903 -
Lsi01g00589 552 Pfam Ubiquitin interaction motif 473 488 IPR003903 -
Lsi01g00589 552 Pfam von Willebrand factor type A domain 155 263 IPR002035 -
Lsi01g00589 552 Gene3D - 3 109 IPR036873 -
Lsi01g00589 552 MobiDBLite consensus disorder prediction 389 427 - -
Lsi01g00589 552 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 7 106 IPR036873 -
Lsi01g00589 552 Gene3D - 369 460 - -
Lsi01g00589 552 MobiDBLite consensus disorder prediction 479 499 - -
Lsi01g00589 552 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 150 551 - -
Lsi01g00589 552 MobiDBLite consensus disorder prediction 534 552 - -
Lsi01g00589 552 Pfam Rhodanese-like domain 15 105 IPR001763 -
Lsi01g00589 552 Gene3D von Willebrand factor, type A domain 152 335 IPR036465 -
Lsi01g00589 552 MobiDBLite consensus disorder prediction 408 423 - -
Lsi01g00589 552 MobiDBLite consensus disorder prediction 517 552 - -
Lsi01g00589 552 ProSiteProfiles Rhodanese domain profile. 21 107 IPR001763 -
Lsi01g00589 552 SUPERFAMILY vWA-like 153 324 IPR036465 -
Lsi01g00589 552 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 473 492 IPR003903 -
Lsi01g00589 552 SMART uim 473 492 IPR003903 -
Lsi01g00589 552 SMART uim 441 460 IPR003903 -
Lsi01g00589 552 SMART uim 371 390 IPR003903 -
Lsi01g00589 552 ProSiteProfiles VWFA domain profile. 154 338 IPR002035 -
Lsi01g00589 552 Coils Coil 381 406 - -
Lsi01g00589 552 CDD RHOD 15 107 - -
Lsi01g00589 552 CDD VWA_26S_proteasome_subunit 150 337 - -
Lsi01g00589 552 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 150 551 - -
Lsi01g00589 552 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 371 390 IPR003903 -
Lsi01g00589 552 SMART VWA_4 151 324 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00589 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 699.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00589 Lsi07g01096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00589 Lsi-Chr1:4681807 Lsi01g00591 Lsi-Chr1:4712293 8.37E-24 dispersed
Lsi01g00589 Lsi-Chr1:4681807 Lsi01g00590 Lsi-Chr1:4706604 1.51E-39 tandem
Lsi01g00589 Lsi-Chr1:4681807 Lsi10g00484 Lsi-Chr10:6980817 1.49E-18 wgd
Lsi01g00589 Lsi-Chr1:4681807 Lsi07g01096 Lsi-Chr7:16345849 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00589 Lsi_Chr01 FPKM 40.845287 48.705128 60.134331 61.087215 29.838879 23.254253 34.594975 48.225605 53.095795 58.5182