Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00593 ATGCGAATGATGGATAGCAACAAACCGATCCTCAAGGCTTCATCTCTGAGATGGAAAATTCTCCGTCAAGCGCTTATTCCTCGTTCTTCCTCCCGCAATGAGGATCAATCTGAAGTGGACACCAAGCGTATTTCTAGGAGGACGACGAACGGCTTCAATTTGATTCCCTCATTTATAACGGACGACATTGGAGACGAAGGCATGGGTGGTTTTTCTGTATCTCATTGCTCCGATCACCGTCGGGATCGTCGCGTGTGCTATACCTTGCCTATTGATGGAGCGTCCAAACTTTTCCTCAAGCAAAGAATGGACGATGTTGCTGACCTTGATGACTTCAAGATCTGTAATAAATACGAGATTGACAACACCGGGCTTGTTTGGGAATACATGCCAATTTCTTGTTTGTCGGCTTGTAGATATAAATATGATCCGTCGGACAGACTACACAATTACATAGGTCATTGGCCATCAGAAGATGTTCTTGCTTACTTCTGTTTGTTGCATTCAGACCTATTTAGGTTAGCCTCTGGATGTAAGAGAGTTATTGAGCTTGGATCTGGTTATGGTCTGGCTGGATTAGTTGTTGCTGCAAGTACAGAAGCATCAGAAGTTGTTATCACAGATGGAAATCCTCAACACCTAGATATTCAGCATAATATAGCAATGAACTCTAAAGCATTTGGTGGCACCAGAGTAGATGCTTTGACGTTGCATTGGAATCAGGAAAACGTCTCAAATATATCTGGCAGTTTTGATCTCATTATTGCCAGTGACTGCACTTTTTTTAAAGAATACCATCAAGGTCTTGCTAGAACGGTCATGTCCTTGTTGAAGAAAGTAGATTCATCAGAAGCTATATTTTTTAGCCCCAAAAGAGGTGACTCACTCATGAAGTTTCTAGAGGAAATCAAAGCCAATGGCTTGCATTTCAGTGTGACAGAGGACTATAATGCTGAAGTTTGGAAACTGCATGAGAAATTCTCTAAGGGTGATGACTCCTGGCCTGGATATGAAAAGGATCATTGCTATCCATTATTGGTCAGAATTACTGTCTGA 1056 41.95 MRMMDSNKPILKASSLRWKILRQALIPRSSSRNEDQSEVDTKRISRRTTNGFNLIPSFITDDIGDEGMGGFSVSHCSDHRRDRRVCYTLPIDGASKLFLKQRMDDVADLDDFKICNKYEIDNTGLVWEYMPISCLSACRYKYDPSDRLHNYIGHWPSEDVLAYFCLLHSDLFRLASGCKRVIELGSGYGLAGLVVAASTEASEVVITDGNPQHLDIQHNIAMNSKAFGGTRVDALTLHWNQENVSNISGSFDLIIASDCTFFKEYHQGLARTVMSLLKKVDSSEAIFFSPKRGDSLMKFLEEIKANGLHFSVTEDYNAEVWKLHEKFSKGDDSWPGYEKDHCYPLLVRITV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4728666 4731790 + Lsi01G005930.1 Lsi01g00593 653251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00593 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 158 279 IPR029063 -
Lsi01g00593 351 CDD AdoMet_MTases 180 279 - -
Lsi01g00593 351 Pfam Lysine methyltransferase 155 305 IPR019410 -
Lsi01g00593 351 PANTHER CALMODULIN-LYSINE N-METHYLTRANSFERASE 6 350 IPR025800 GO:0005737|GO:0018025
Lsi01g00593 351 Gene3D Vaccinia Virus protein VP39 141 351 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00593 K18826 CAMKMT; calmodulin-lysine N-methyltransferase [EC:2.1.1.60] - csv:101222055 574.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00593 Lsi-Chr1:4728666 Lsi01g00677 Lsi-Chr1:5458877 6.05E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1123 . . . . . . . . . . . Cma07g00419 . Car07g00368 . Cpe19g00865 . Bhi03g00850 . . . . . . . . . . . . . . . Cone6ag1688 Cone9ag1610 Lsi01g00593 . . Cme08g00939 Blo05g00708 . . . . Bpe06g00131 . . . . Cmo07g00416 . . . . . . . . . . . . . . . . . . . . . Csa06g03336 Chy02g00563 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005598 0 9 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00593 Lsi_Chr01 FPKM 32.500603 29.579212 8.941582 9.950119 25.848228 17.279444 22.708811 0.171861 0.072824 0.076726