Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00595 CAGAACCAAAGCATTTGGAGCCATTTTCTCAGTTCATTTCAAGCTCAGTTTCTTCATTTGGCTATGGCTTCCATTCATTTCATCTTCTTTTCATTCTTTCTCTTCTTCCACTTTCTTTCCCTCTCTCACTCTGCAACCATCACACTCCAAAACAATTGCACTCACACCATTTGGCCCGGCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACCGGCTTCTCCCTCCTCCCCGCTGCCGTCTCCGTCCTCTCCGTCCCCCCCTCCTGGTCCGGCCGCATTTGGGCTCGAACCTACTGCTTCACCGACCCCTCCTCCGGCCGCTTCTCCTGCGCCACAGCCGACTGCGGCTCCGGCACCGTCGCGTGCGGCGGAGCCTGCGCTGCCCCACCCGCCACTCTTGCCGAATTCACCCTTAACGGCGGCGGCGGGTTTGATTTCTACGACGTGAGCCTCGTGGACGGGTACAACATCGCGATGCAGATCGTGCCGGTGGGTGGGAAGTCGGGAAACTGTACGGCCACCGGTTGCATTGCGGATTTGAACGGGGATTGCCCACCGGAACTGCAGGTGGTGATGGGCGGGGGAGAGGGGAGCGTGGCGTGTAAAAGCGCGTGTGTGGCGTTTGAGAAAGCGGAATATTGCTGCAGTGGGGCGTTTGCAAATCCAAACACGTGCAAGCCGAGTAATTACTCAAAATTTTTCAAGACCAATTGCCCGTTGGCTTACAGTTACGCGTTCGATGACGGAACCAGCACTTTCACCTGTGTGTCAGCCAATTATGTCATTACTTTTTGCCCTTCTTCCTCTTTACCCAGTTTGAAGGCATCTAGTGAACCACAACCGCAAGCGGCTGACATTTCAGGTTGCCGGCGTCGCACTGCACCGCCGTCCTTGGGCATTTTCACCGCCGTGTGGGTGGCCGTTTGGCGGCTGCGGCATCTGTTTCTACACTGCCAAAATCACTGA 972 56.38 QNQSIWSHFLSSFQAQFLHLAMASIHFIFFSFFLFFHFLSLSHSATITLQNNCTHTIWPGILSGAGTAPLSTTGFSLLPAAVSVLSVPPSWSGRIWARTYCFTDPSSGRFSCATADCGSGTVACGGACAAPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVPVGGKSGNCTATGCIADLNGDCPPELQVVMGGGEGSVACKSACVAFEKAEYCCSGAFANPNTCKPSNYSKFFKTNCPLAYSYAFDDGTSTFTCVSANYVITFCPSSSLPSLKASSEPQPQAADISGCRRRTAPPSLGIFTAVWVAVWRLRHLFLHCQNH 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4750179 4751881 - Lsi01G005950.1 Lsi01g00595 653253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00595 323 ProSiteProfiles Thaumatin family profile. 44 268 IPR001938 -
Lsi01g00595 323 CDD TLP-PA 46 267 - -
Lsi01g00595 323 ProSitePatterns Thaumatin family signature. 108 124 IPR017949 -
Lsi01g00595 323 PANTHER - 40 282 - -
Lsi01g00595 323 Pfam Thaumatin family 51 268 IPR001938 -
Lsi01g00595 323 SUPERFAMILY Osmotin, thaumatin-like protein 45 269 IPR037176 -
Lsi01g00595 323 SMART tha2 47 268 IPR001938 -
Lsi01g00595 323 Gene3D Thaumatin 45 268 IPR037176 -
Lsi01g00595 323 PIRSF PR5 3 306 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 258 267 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 147 163 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 46 58 IPR001938 -
Lsi01g00595 323 PRINTS Pathogenesis-related protein signature 94 105 IPR001938 -
Lsi01g00595 323 PANTHER OS03G0233200 PROTEIN 40 282 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00595 - - - cmax:111497364 478.018
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00595 Lsi07g01100 CCT
Lsi01g00595 Lsi07g01100 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00595 Lsi-Chr1:4750179 Lsi07g01100 Lsi-Chr7:16405759 6.67E-115 dispersed
Lsi01g00594 Lsi-Chr1:4740368 Lsi01g00595 Lsi-Chr1:4750179 1.06E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00595 Lsi_Chr01 FPKM 16.440382 16.526794 26.495489 27.832577 14.122277 13.951099 14.24538 2.985279 3.194425 3.13136