Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00597 ATGGCGGAGATCAAGCTAATCTTGGCTCGGCCGATTCAATTGGCTGACCAAGTTACCAAGGCGGCCGATGAGGCCACCAGTTGCAAGCAGGAGTGCGCCGACCTCAAGGGCAAGACGGAAAAGCTCGCTACTCTTCTCCGTCAGGCGGCTCGAGCGAGTTCCGATCTCTACGAGCGTCCGGCCACTCGGATCATTAACGAAACTGCTCAATCTTTAGATAAAGCTTTGTCGCTGGTGCTTAAATGCAGCGGCAATGGTCTTATGAAGCGTGTTTTTACAATCATCCCTGCTGCCGCCTTCCGAAAATCCTGCTCCCAACTTGAGAATTCCATCGGTGATGTTTCGTGGTTGCTTCGAGTTTCCGCCTCTGCTGAGGATCGTGGCGACGAGTATTTGGGTCTTCCCCCAATCGCCGCTAACGAACCCATTCTTGGTCTCATCTGGGAACAGATTGCTATTCTCTCAACCGGCTCGCCGGAAGATAGAGCTGACGCGGCGGCGTCGCTGGTTTCTTTGGCGAAAGACAGCGAGAGGTATGGGAAACGGATAATCGAAGAAGGCGGCGTTGGGGCGCTGCTGAAATTGCTGAAAGAAGGTAAGGTTGAAGGTCAAGAAAACGCTGCAAATGCAATTGGGCTTTTAGGGCGTGACCCTGAGAATGTTGAGGCCATGATTCAGGCTGGTGTCTGCCAAGTGTTTGCGAAAATTCTCAAAGAAGGTCCGATGAAAGTTCAGGCTGTGGTTGCTTGGGCTGTATCAGAACTGGTTTCTAGTTACCCAAAATGCCAAGATCTCTTTGAACAACACTATATTATCCGCTCCCTTGTTAGCCATCTTGCGTTTGAGACTGTTCAAGAACACAGCAAATACAATATCACTGCCAATAAAGCCACCTCGATCCATGCTCTGGTAATGGCGAGCAACCCCAAAACCAATAATGTGTATAAAGCTGCGGATGATGATGATCGACAGCTCCACAGTCGGATTCTTCATCCGATGGGAAATCGAACCCCAAATCAGATGCACGCTGTGGTTACCAACACTATGAACATGCTCTCTGGTGGGTCGTTGCCGGCTACAACAGCAACTCCACAGGCAAGCCATAACGAAGGCCACAGCCTTAGCAGCAATGGGAAACATATTCTTCCACATCTTTCCCCTTACCTTCACCATGCTCATTCCGGCCCCAGCACGAAAGGGAGGGAACTCGAGGACCCGGCAACGAAAACCAAGATGAAAGCCATGGCAGCTAGAGCCCTTTGGCAGCTTGCCAAAGGGAATTTGACAATCTGCCGTAGTATTACAGAATCAAGAGCATTATTGTGTTTTGCTGTTCTACTCGAGAAGGGGGAACAGAATGTGCGGCATAACTCTGCAATGGCATTGATGGAGATCACTGCCATGGCGGAGCACGATCCTGAATTGAGAAGATCTGCCTTCAAGCCGACTTCGCCCGCTTGCAGAGCTGTTGTGGAACAGTTGCTGAAGATCATTGAAAAAGAAGATGCAGATCTTCTCATCCCTTGTATCAAATCCATTGGACATTTGGCAAGGACGTTCCGAGCGACCGAGAAGAGAATGATCATCCCATTGGTGCAGCTTCTCGACGAAAGAGAGACCGAGGTCTCAAAGGAGGCCTGCATTGCTCTCACCAAATTTGCCTGCACAGAAAACTTCCTCCACATCAACCACTGCGAGGAAATTATAGCTGCAGGAGGGGCAAAACACTTAGTCCAGCTAGTGTACTTTGGGGAACAAAGTGTTCAACTTGATGCTGTAACTCTGTTGTGCTACATTGCCCTGCATTTGCCAGATAGAGAGGAGCTTGCTCGAGCCGAGACACTTCCCGTGATCGAATGGGCGTCAAAACAATCTCATTTGACGCAGGACGAAAAACACGAAAGACTCTTACATGAGGCTGCAAATAAGCTAGAGCTGTTTCAATCTAGAGGTCCAAGAGGATACCATTGA 1971 49.57 MAEIKLILARPIQLADQVTKAADEATSCKQECADLKGKTEKLATLLRQAARASSDLYERPATRIINETAQSLDKALSLVLKCSGNGLMKRVFTIIPAAAFRKSCSQLENSIGDVSWLLRVSASAEDRGDEYLGLPPIAANEPILGLIWEQIAILSTGSPEDRADAAASLVSLAKDSERYGKRIIEEGGVGALLKLLKEGKVEGQENAANAIGLLGRDPENVEAMIQAGVCQVFAKILKEGPMKVQAVVAWAVSELVSSYPKCQDLFEQHYIIRSLVSHLAFETVQEHSKYNITANKATSIHALVMASNPKTNNVYKAADDDDRQLHSRILHPMGNRTPNQMHAVVTNTMNMLSGGSLPATTATPQASHNEGHSLSSNGKHILPHLSPYLHHAHSGPSTKGRELEDPATKTKMKAMAARALWQLAKGNLTICRSITESRALLCFAVLLEKGEQNVRHNSAMALMEITAMAEHDPELRRSAFKPTSPACRAVVEQLLKIIEKEDADLLIPCIKSIGHLARTFRATEKRMIIPLVQLLDERETEVSKEACIALTKFACTENFLHINHCEEIIAAGGAKHLVQLVYFGEQSVQLDAVTLLCYIALHLPDREELARAETLPVIEWASKQSHLTQDEKHERLLHEAANKLELFQSRGPRGYH 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4765863 4767833 - Lsi01G005970.1 Lsi01g00597 653255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00597 656 PANTHER - 4 656 - -
Lsi01g00597 656 PANTHER ARMADILLO REPEAT ONLY 4 4 656 - -
Lsi01g00597 656 SUPERFAMILY ARM repeat 151 626 IPR016024 -
Lsi01g00597 656 SMART arm_5 515 555 IPR000225 GO:0005515
Lsi01g00597 656 SMART arm_5 175 216 IPR000225 GO:0005515
Lsi01g00597 656 SMART arm_5 427 467 IPR000225 GO:0005515
Lsi01g00597 656 SMART arm_5 217 257 IPR000225 GO:0005515
Lsi01g00597 656 SMART arm_5 561 601 IPR000225 GO:0005515
Lsi01g00597 656 Pfam Armadillo/beta-catenin-like repeat 183 213 IPR000225 GO:0005515
Lsi01g00597 656 Pfam Armadillo/beta-catenin-like repeat 217 256 IPR000225 GO:0005515
Lsi01g00597 656 Gene3D - 3 120 IPR036537 GO:0007166
Lsi01g00597 656 Gene3D - 374 644 IPR011989 -
Lsi01g00597 656 MobiDBLite consensus disorder prediction 354 407 - -
Lsi01g00597 656 MobiDBLite consensus disorder prediction 354 380 - -
Lsi01g00597 656 Gene3D - 145 323 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00597 - - - csv:101221744 1195.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00597 Lsi-Chr1:4765863 Lsi08g01647 Lsi-Chr8:24322527 5.35E-112 dispersed
Lsi01g00597 Lsi-Chr1:4765863 Lsi10g00476 Lsi-Chr10:6882761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1117 . . . . . . . Bma15g00941 . . Cma03g00681 Cma07g00424 Car03g00628 Car07g00371 Sed14g1200 Cpe19g00863 Cpe10g00667 Bhi03g00862 Tan03g2088 Cmetu04g1901 . Hepe04g1596 . . Cla01g01984 Cam01g2077 Cec04g1736 Cco04g1802 Clacu01g2099 Cmu01g1974 Cre04g1650 . . Cone6ag1684 Cone9ag1606 Lsi01g00597 . . Cme08g00933 Blo05g00710 Blo06g00299 . . Bpe10g00158 Bpe06g00129 . . Sed01g0209 Cmo03g00706 Cmo07g00421 . . . . . . Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . . . . . . . . . Csa06g03331 Chy02g00569 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006048 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00597 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0