Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00600 ATGAAGATAGTGACTTACAACGTGAATGGTCTTAGGCCACGCATCGCACAGTTTGGTTCACTTCTTAAACTGCTCGATTCCTTCGATGCCGATATAATTTGCATTCAGGAAACGAAATTAAGGAGGCAGGAATTGCGAGCGGATTTAGTCATCGCTGATGGTTACGAATCATTCGTTTCTTGCACCCGTACCTCTGAGAAAGGTCGAACCGGCTACTCAGGGGTTGCTACGTTTTGCCGTGTTAATTCAGCATTTTCGAGTAATGAAGTAGCATTGCCAGTTCGGGCGGAGGAAGGCTTCACAGGTCTTCTAGATAGTTCGCAGGATGGAAAAGGCACAATGGCTGCAGTTGCAGAAGGGCTTGAGGAATTTTCGAAAGAGGAGCTCCTTAAATTAGACAGTGAGGGGCGCTGTATTGTCACAGATCATGGTCATTTTGTTCTCTTCAACATTTATGGCCCTCGAGCTGAAAGTGATGATTCAGAAAGGGTTCTATTCAAGTTAAAATTTTACAATGTGCTACAGAAAAGATGGGAGCATCTTCTGCATCTAGGAAAAAGGATATTTGTCGTTGGTGATCTTAATATTGCACCTACTTCAATGGATCGCTGTGATGCAGGACCAGATTTTGAGAATAATGAGTTTCGGAGATGGCTGAGATCTTTACAGGTGGCATGTGGTGGCCGTTTCATTGACATTTTCAGAGCAAAAAATCCTGATCGAAGAGATGCATATACATGCTGGCCTCAAAGTACAGGTGCCGAGGTATTCAATTATGGGACAAGGATTGATCATGTATTGTGTGCTGGACCATGCTTACATCATGACAGTAACCTGCCAGGCCATGATATTGTAGTTTGTCATGTTATGGAATGTGACATACTGTCACAGTACAAACGCTGGAAAGATGGAAATTCATTTAGATGGAAGGGAGAGCGGACTGTTAAACTAGAAGGTTCTGATCATGCACCGGTTTATGCAAGTCTTCTGGAACTGCCTGAGGTTCCTCAACATAGTACTCCAGCTTTATCTGCAAGATACAATCCCAAGATTCACGGGCTTCAGCAAACTCTTGTGTCAATGCTTCTGAAAAGACAAGCTGCTGAAGATTCAGCACCGTGCAGAATATCAAATTCATTTTCACGTGGGAACATCATCTTAGGGAATTGTTCTCAGGGACATAATGGATCATTTGATAATGTTGACCTACCTGGCTTTCTTCCTAGTGAATCTTGTTCTTTGACAAACCTAGAAACAGAAGATTCTCTATTAGAACCAGGAGAGTGTTCTGGTGGAGGTTATGCTGAGGAGGCTGCATGCAACAACTTAATTACGCACGAGTCTCTACATATGAAAGCATTGCCTGAGAAGGAAACTAGGAAAAGAGTTAGAAGGTGTTCCCAGATGTCATTAAAGTCGTTCTTCCAGAAAAACTCAGTTGTTAGCAACGATGCTGACAGCTCTAATGCAGATTCTTCTATTAACAAAGCAGATACCTCCGAATCTAATCCTATTGAAATTCCTAGATCAAATACTCAAATTAGCGATTCAGGCCAATATTTAGAAGCATACCAGGGTCAGTCTCAAATTAATGCCTCTTCTGTAGAGAAAGAAAAGAGTGGTGTTGCCTTGTTGGAGTGGCGGAGGATACAGCAGGGCCCCGCATCTAATCCGGAAGCAAATTGTGGTTACTTTAAATGGGCGGCTTCCAAATCTCGGCATAAATGA 1728 42.77 MKIVTYNVNGLRPRIAQFGSLLKLLDSFDADIICIQETKLRRQELRADLVIADGYESFVSCTRTSEKGRTGYSGVATFCRVNSAFSSNEVALPVRAEEGFTGLLDSSQDGKGTMAAVAEGLEEFSKEELLKLDSEGRCIVTDHGHFVLFNIYGPRAESDDSERVLFKLKFYNVLQKRWEHLLHLGKRIFVVGDLNIAPTSMDRCDAGPDFENNEFRRWLRSLQVACGGRFIDIFRAKNPDRRDAYTCWPQSTGAEVFNYGTRIDHVLCAGPCLHHDSNLPGHDIVVCHVMECDILSQYKRWKDGNSFRWKGERTVKLEGSDHAPVYASLLELPEVPQHSTPALSARYNPKIHGLQQTLVSMLLKRQAAEDSAPCRISNSFSRGNIILGNCSQGHNGSFDNVDLPGFLPSESCSLTNLETEDSLLEPGECSGGGYAEEAACNNLITHESLHMKALPEKETRKRVRRCSQMSLKSFFQKNSVVSNDADSSNADSSINKADTSESNPIEIPRSNTQISDSGQYLEAYQGQSQINASSVEKEKSGVALLEWRRIQQGPASNPEANCGYFKWAASKSRHK 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4795937 4801495 - Lsi01G006000.1 Lsi01g00600 653258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00600 575 PANTHER AP ENDONUCLEASE 1 565 IPR004808 GO:0004518|GO:0006281
Lsi01g00600 575 ProSitePatterns AP endonucleases family 1 signature 1. 30 39 IPR020847 GO:0003677|GO:0004519|GO:0006281
Lsi01g00600 575 Pfam Endonuclease/Exonuclease/phosphatase family 4 269 IPR005135 GO:0003824
Lsi01g00600 575 ProSiteProfiles AP endonucleases family 1 profile. 1 331 IPR004808 GO:0004518|GO:0006281
Lsi01g00600 575 MobiDBLite consensus disorder prediction 482 513 - -
Lsi01g00600 575 SUPERFAMILY DNase I-like 1 329 IPR036691 -
Lsi01g00600 575 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2 1 565 - -
Lsi01g00600 575 Gene3D Endonuclease/exonuclease/phosphatase 1 330 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00600 K10772 APEX2; AP endonuclease 2 [EC:4.2.99.18] - csv:101222374 1007.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00600 Lsi-Chr1:4795937 Lsi03g01529 Lsi-Chr3:26294033 5.90E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1115 . . . Bda10g00185 . . . . . . . Cma07g00426 . Car07g00373 Sed10g0999 . . Bhi03g00865 Tan03g2085 Cmetu04g0755 . Hepe04g1593 . . . . . . . . . . . Cone6ag1683 . Lsi01g00600 . . . . Blo06g00300 . . . . . . . . Cmo07g00423 . . . . . . . . . . . . . . . . . . . . . . Chy02g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011738 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00600 Lsi_Chr01 FPKM 31.070652 34.50362 27.454084 25.207544 42.507732 36.895744 38.798405 28.641058 28.453144 30.033409