Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00601 ATGATCCAAATTGGTTGGGGCGCGGGGCAGCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGCGCTGGATTTTGTGGTATCGTTTCGTATTATAGTGGAGGTGTTAGCTGGAAGACGGGAGATTTCTCTCAATCTATTGTACCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCTCTCCCTGTGTCCTCCACTCGCCACCATAACAACCAGCTTACTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTCGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGGTTAAAGGCTGACTATGAAGCTCTTTCTGAAGAATCTCGTGAGCTAACCCAGGAAAAGAATGAGATTAGAGAAGAGAAGGCTTCATTAAAGTCGGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCGGTGGTCATGGGGCCCCCATATTCCTACCCAGTTCCTGTTCCTGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCCGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCAATCGATCAGCCTTCCGCCCAATATGCTTCCAATTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAAGCGTAGTAATGTGGAAAGATGTGATGAATCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCGCAAAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGCGTTGGCGACATCCCGAAACAGAACAACTGA 1107 45.44 MIQIGWGAGQPRGRGSWSARSGAGFCGIVSYYSGGVSWKTGDFSQSIVPADLVPSSSLQPQPLPVSSTRHHNNQLTESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNEIREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAQYASNSHISSKQDSRSKSSDQHKRSNVERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4802303 4805715 + Lsi01G006010.1 Lsi01g00601 653259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00601 368 MobiDBLite consensus disorder prediction 264 368 - -
Lsi01g00601 368 MobiDBLite consensus disorder prediction 280 305 - -
Lsi01g00601 368 CDD bHLH_AtILR3_like 97 171 - -
Lsi01g00601 368 PANTHER TRANSCRIPTION FACTOR BHLH121 68 367 IPR044579 GO:0003700|GO:0055072
Lsi01g00601 368 SMART finulus 98 148 IPR011598 GO:0046983
Lsi01g00601 368 MobiDBLite consensus disorder prediction 264 279 - -
Lsi01g00601 368 Coils Coil 132 187 - -
Lsi01g00601 368 Pfam Helix-loop-helix DNA-binding domain 93 142 IPR011598 GO:0046983
Lsi01g00601 368 MobiDBLite consensus disorder prediction 340 368 - -
Lsi01g00601 368 Gene3D - 91 175 IPR036638 GO:0046983
Lsi01g00601 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 142 IPR011598 GO:0046983
Lsi01g00601 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 162 IPR036638 GO:0046983
Lsi01g00601 368 MobiDBLite consensus disorder prediction 310 325 - -
Lsi01g00601 368 PANTHER TRANSCRIPTION FACTOR BHLH11 68 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00601 Lsi-Chr1:4802303 Lsi05g00630 Lsi-Chr5:7771313 6.15E-21 dispersed
Lsi06g01473 Lsi-Chr6:25240732 Lsi01g00601 Lsi-Chr1:4802303 2.92E-21 transposed
Lsi01g00601 Lsi-Chr1:4802303 Lsi10g00463 Lsi-Chr10:6712227 7.64E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24590 PF00010 HLH 7.40E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00601 - - csv:101222613 550.436