Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00605 ATGGGAGGGGCTCCATCCGAAAGGGAGGAGAAAGTATCCTTGGAGCTAACTGAAGAAGTCCTTCAAAGTATGGAAGTCGGCATGACTTTCAGAGACTATAATGGTAGAATCAGTTCAATGGACTTTCATAGGACTTCAAGCTATCTGGTGACTGCAAGTGATGATGAATCCATCCGACTATATGATGTTGCCAGTGCAACATGTTTGAAAACAATTAACAGCAAAAAGTACGGGGTTGATCTGGTTTGCTTTACTTCTCATCCTACAACAGTGATATATTCTTCAAAAAATGGATGGGATGGTAATTCTCTGCGGCTTCTCTCCTTGAACGACAATAAGTACCTGCGGTACTTTAGAGGTCATCATGACAGAGTTGTATCACTCAGCTTATGCGCTCGCAAAGAATGCTTTATATCCGGCTCTCTTGATCGGACTGTTTTGCTTTGGGATCAAAGAGCAGAGAAGTGCCAGGGTCTTTTACGGGTACAAGGAAAGCCAGCTACAGCATATGATGAGCAAGGTGTGGTCTTTGCCATTGCCTTTGGAGGTTACATAAGGATGTTTGATGCTCGCAAATATGAGAAGGGTCCTTTTGATATATTTTCTGCTGGGGAAGATCTATCCGATGCAAATATTGTAAAGTTCAGTAATGACGGGAGACTCATGTTGTTGACAACTTCGGATGGGCATATTCATGTTCTCGATTCTTTTAGGGGAACACTATTATCTACGTACAATGTAAAACCCATTTCAAGCAATTTGACGTTGGAGGCATCTTTTAGTCCAGAGGGAATGTTTGTGATATCAGGTAACCATCAATCTTTCTTGTGTTTGTTGGATCAAAGTTCGGGAGATGGCAGTGTTTATGCTTGGAGTGTAAGGAGTGGAAAAGAGGTAGTGAAAGTTGCAAGCTGGATGAGCACTGAAATGGAGCCTCCTGTCATAAAGTGGGCTCCGGGAAGTCTAATGTTTGCAACTGGATCTTCTGAACTGTCATTTTGGATACCTGATTTGTCTAAATTGGGAGCTTATGTAGACAGAAAATAG 1047 42.12 MGGAPSEREEKVSLELTEEVLQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRLYDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDGNSLRLLSLNDNKYLRYFRGHHDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAFGGYIRMFDARKYEKGPFDIFSAGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISSNLTLEASFSPEGMFVISGNHQSFLCLLDQSSGDGSVYAWSVRSGKEVVKVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4870115 4873723 + Lsi01G006050.1 Lsi01g00605 653263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00605 348 PANTHER WD40 REPEAT PROTEIN SWD2 1 347 IPR037867 GO:0048188
Lsi01g00605 348 SMART WD40_4 23 62 IPR001680 GO:0005515
Lsi01g00605 348 SMART WD40_4 111 150 IPR001680 GO:0005515
Lsi01g00605 348 SMART WD40_4 194 235 IPR001680 GO:0005515
Lsi01g00605 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 30 65 - -
Lsi01g00605 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 71 IPR001680 GO:0005515
Lsi01g00605 348 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 347 - -
Lsi01g00605 348 Gene3D - 13 334 IPR015943 GO:0005515
Lsi01g00605 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 150 IPR001680 GO:0005515
Lsi01g00605 348 Pfam WD domain, G-beta repeat 35 62 IPR001680 GO:0005515
Lsi01g00605 348 Pfam WD domain, G-beta repeat 114 150 IPR001680 GO:0005515
Lsi01g00605 348 SUPERFAMILY WD40 repeat-like 31 337 IPR036322 GO:0005515
Lsi01g00605 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00605 K14962 WDR82, SWD2, CPS35; COMPASS component SWD2 - csv:101202819 638.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00605 Lsi-Chr1:4870115 Lsi03g01361 Lsi-Chr3:24528223 9.81E-109 dispersed
Lsi01g00605 Lsi-Chr1:4870115 Lsi02g02285 Lsi-Chr2:29422484 5.84E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1107 . . Bda04g00022 . . . . . . . Cma03g00688 Cma07g00430 Car03g00634 Car07g00378 Sed14g1189 Cpe19g00857 Cpe10g00661 Bhi03g00871 Tan03g2068 Cmetu04g0034 . Hepe04g1588 . . Cla01g01977 Cam01g2071 Cec04g1730 Cco04g1795 Clacu01g2092 Cmu01g1968 Cre04g1643 . . . . Lsi01g00605 . . Cme08g00924 Blo05g00828 . . . . Bpe06g00022 . . . Cmo03g00714 Cmo07g00428 . . . . . . . . . . . . . . . . . . . . . Csa06g03322 Chy02g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008578 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00605 Lsi_Chr01 FPKM 0.0 0.0 0.0 2.548841 0.335874 0.376153 0.391527 0.0 0.0 2.264416