Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00606 CAACAGCAACAGCAGCAGCAAGGAAATGATCAAGAAGGAAGCAATGGGAAAGGGTTTTTATGCAGGCAAAGTAGTACTCGGTGGACTCCAACAACTGACCAAATTAGAATATTGAAAGAGCTTTATTATAACAATGGTGTTAGGTCTCCAAGCGCTGATCAAATTCAGAGGATCTCTGCTAGGCTTAGACAGTACGGTAAAATTGAAGGCAAGAACGTTTTTTATTGGTTTCAGAACCATAAGGCTCGTGAAAGACAGAAAAAAAGATTCACTACCACCGCTCCTTCTTCTTCCCCCACTACTACAGATCATCATCTTCAACATTTTTCTCTACCAAAACAGCAACAACTTATTTCTTCAACTAACAATAATATTAATAATTGGAAGCCTGAAGATTCTTCTTCTTCCTCTCCATTGTTCCACAACAAATACCCACCAAATATCTCCCCTGATTTTAATTTTGTGTTCGATCGTTTTGTGCTTGCAGTTGCAGCAGCTCCATCTTCTTCGGTTATGGTTGCCGTGGGGCATATGGGAAATTACGGATATGGGTCTGCCACTTTTGAGAACAGTTTTAGAGAATGTTCCATATCGTCGGGAGGAAGTAGCAGCGTAGTCGGGTATCGGAGCCACAACATGGGATCATGGATCGGCGTCGATCCGTATTCTTCTCCGGCAGCGGCGGCGGGAGCCAATGTCTTTGAAAAGACAAAATATGTTGAGGAATCCATGGAAGACGAGGACCAGGAGATCGAAACTCTCCCTCTCTTCCCCATCCACGGTGACCGGAATCTCGGAGGTTTCTGCAGCATGAAGCCGGAATATTCTGACAGCTACTACACTACCACTTGGTACGGCCGCTCTGACGACGGCGCCGCCGGTTCTCGGGCTTCGCTTGAACTCAGCCTCAACTCTTACACCACCATCTCACCGGATGATGGAATGTGA 948 45.68 QQQQQQQGNDQEGSNGKGFLCRQSSTRWTPTTDQIRILKELYYNNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTTTAPSSSPTTTDHHLQHFSLPKQQQLISSTNNNINNWKPEDSSSSSPLFHNKYPPNISPDFNFVFDRFVLAVAAAPSSSVMVAVGHMGNYGYGSATFENSFRECSISSGGSSSVVGYRSHNMGSWIGVDPYSSPAAAAGANVFEKTKYVEESMEDEDQEIETLPLFPIHGDRNLGGFCSMKPEYSDSYYTTTWYGRSDDGAAGSRASLELSLNSYTTISPDDGM 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4880194 4882315 - Lsi01G006060.1 Lsi01g00606 653264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00606 315 MobiDBLite consensus disorder prediction 1 25 - -
Lsi01g00606 315 Pfam Homeodomain 25 86 IPR001356 GO:0003677
Lsi01g00606 315 Gene3D - 25 91 - -
Lsi01g00606 315 ProSiteProfiles 'Homeobox' domain profile. 21 87 IPR001356 GO:0003677
Lsi01g00606 315 PANTHER PROTEIN WUSCHEL 3 307 - -
Lsi01g00606 315 CDD homeodomain 26 88 IPR001356 GO:0003677
Lsi01g00606 315 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 307 IPR044555 GO:0003700|GO:0099402
Lsi01g00606 315 SUPERFAMILY Homeodomain-like 20 91 IPR009057 -
Lsi01g00606 315 SMART HOX_1 23 91 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00606 - - - csv:101203055 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00606 Lsi-Chr1:4880194 Lsi02g00230 Lsi-Chr2:1934707 6.92E-27 dispersed
Lsi01g00606 Lsi-Chr1:4880194 Lsi06g01287 Lsi-Chr6:23429509 3.23E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1106 . . Bda04g00024 . . . . . . . Cma03g00690 Cma07g00431 Car03g00635 Car07g00379 . . Cpe10g00659 Bhi03g00873 . . . . . . Cla01g01974 Cam01g2067 Cec04g1726 Cco04g1792 Clacu01g2088 Cmu01g1965 Cre04g1639 Cone8ag0846 Cone12ag0720 . . Lsi01g00606 . . Cme08g00921 . . . . . . . . . Cmo03g00716 Cmo07g00429 . . . . . . . . . . . . . . . . . . . . . Csa06g03319 Chy02g00579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007879 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24591 PF00046 Homeodomain 1.60E-17 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00606 Lsi_Chr01 FPKM 0.0 0.0 1.824188 0.0 0.0 0.0 0.0 1.822165 1.844161 0.07502