Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00607 ATGCTCGTCCGTCTCCGTTGCTTGCATTTGATTGTCCGTCACTCGCCGATGGCAATTAGTCATCAGCATCTCAAACTTGAAGACCCTTTTCTTCATAATTACAAGCCCTCAGAGCTACGGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCGTTTCTTTCGAGAGATCTCTGCGAAGACTGCACCAAATTGCTCTCGAATCGTATCCGCGCCCTCGATCCAGCTGTCTGTTCCGACGAGAATTTAAGTTCTGCATCACCAGTGGAAGACATGCATGAGAGTAATGGGAATCAGGATGATGCTTGTGATGCAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGGAGTTGGAAGGACGGCATAACTGAAGGGAATGAAGCTGATGGAGTACCTGAAACTTCTTCTAGTGAACTGTCCTCTAAATTAAATTCCACCAAGACCTCAGGGCCTCGAATGTCGTGGGCTGATATGACTCAGGAAGATGAACTAGAAGAAGAGGAAGATGAGTACGAATTAGAAAAAAGATTAGTCAGTATTAATGAGTCCACAAGGAAATTAACAATATCGAAGGTTATTGAGAAGCCACAGCTGTCTAGAGAGCAGAGAGAGTACATCAGATTCATGAATGTTGGACGGAAGAAAGATTTTATTTGTCTGGAAAGGTTTAAAGGGAAAGTAGTAAATATTCTTGAAGGACTCGAGCTTCATACTGGTATTTTTAGTGCTGCAGAACAGAAGAGAATAGTTGATCATGTTTATGCACTTCAGGAAATGGGCAAGAAGGGAGAATTAAGAGAACGAACATTTTCAGCTCCTAAAAAGTGGATGAAGGGAAAGGGGCGTGTAACTATGCAGTTTGGGTGCTGTTACAATTATGCACCTGATAAAAATGGCAATCCTCCTGGAATTCTTCGAAGTGAAATTGTGGATCCAATACCTTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAAGTGGCATGTGCTTCCTCCAACATGTGTTCCAGATAGTTGCATTGTGAACATCTACGATGAAGGGGACTGTATTCCTCCTCATATTGACAACCACGATTTTGTTCGACCATTTTGCACTGTGTCATTTCTCAGTGAATGCAATATTGTTTTTGGATCAAACCTTTCTATTGTAGGACCGGGTGAATTTTCTGGGCCAATTGCAATCCCTCTGCCTGTGGGGTCCGTACTTGTATTAAATGGAAATGGAGCTGATGTTGCTAAGCATTGTGTACCTGCAGTCCCTACAAAGAGGTATAATTCAGGAAGGATATCAATTACATTTAGAAGAATTGATGAATCCAAAAGGCCAATTGAGTATGCTTCAGAACCGGATTTGCAGGGAATTCAACCATTGCCTTACGAAGCAAGTGAAAATGATGTACCAACTTCTCCTGTATCATCAGAAAGGGAAATAAGGAGGCAGCCATTTAGGAGGGGTAGTCATATGAGAACCAGAGGATCTGGAAACAGAAGCGACACTCGATTTGATCCACGCAATCCAGGTAGAGCTCGACATAATTCAGCAGATAGGAGAAGCAGAGAGTAA 1575 42.41 MLVRLRCLHLIVRHSPMAISHQHLKLEDPFLHNYKPSELRIASEFLTTWLPFLSRDLCEDCTKLLSNRIRALDPAVCSDENLSSASPVEDMHESNGNQDDACDANSLGSWKDEAETNSLGSWKDGITEGNEADGVPETSSSELSSKLNSTKTSGPRMSWADMTQEDELEEEEDEYELEKRLVSINESTRKLTISKVIEKPQLSREQREYIRFMNVGRKKDFICLERFKGKVVNILEGLELHTGIFSAAEQKRIVDHVYALQEMGKKGELRERTFSAPKKWMKGKGRVTMQFGCCYNYAPDKNGNPPGILRSEIVDPIPSLFKVIIRRLVKWHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLSIVGPGEFSGPIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRYNSGRISITFRRIDESKRPIEYASEPDLQGIQPLPYEASENDVPTSPVSSEREIRRQPFRRGSHMRTRGSGNRSDTRFDPRNPGRARHNSADRRSRE 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4894336 4899607 - Lsi01G006070.1 Lsi01g00607 653265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00607 524 Pfam 2OG-Fe(II) oxygenase superfamily 238 438 IPR027450 -
Lsi01g00607 524 MobiDBLite consensus disorder prediction 80 124 - -
Lsi01g00607 524 MobiDBLite consensus disorder prediction 448 524 - -
Lsi01g00607 524 MobiDBLite consensus disorder prediction 495 524 - -
Lsi01g00607 524 MobiDBLite consensus disorder prediction 80 171 - -
Lsi01g00607 524 Gene3D - 222 448 IPR037151 -
Lsi01g00607 524 PANTHER RNA DEMETHYLASE ALKBH9B 21 521 - -
Lsi01g00607 524 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 339 441 IPR005123 -
Lsi01g00607 524 SUPERFAMILY Clavaminate synthase-like 234 440 - -
Lsi01g00607 524 Coils Coil 165 185 - -
Lsi01g00607 524 MobiDBLite consensus disorder prediction 133 159 - -
Lsi01g00607 524 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 21 521 IPR044842 GO:0003729|GO:0006402|GO:0032451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00607 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 904.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00607 Lsi-Chr1:4894336 Lsi05g00183 Lsi-Chr5:2632266 1.02E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00607 Lsi_Chr01 FPKM 18.790874 17.567402 40.688046 37.723873 16.467163 12.260661 13.797109 36.035606 32.647541 30.757538