Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00609 ATGGATGGAGGGAAGGAGGGGATGGAAGGAAAAGTAGCGTCACAACTAGCAATGAGCGAAGGTAAAGAAGGCGATTGGGAGTGCAGTGGATGCAAGAACAGGAACTATGCTTTCCGATCCTTTTGTAACAGATGCAAACAACCTCGCCTTCTCGTCGACAATAAAACGCCTCCAGACTCCAAATGGCTTCCTCGTATCGGTGACTGGATCTGCACGGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGTGGACAACCAAAGGAGGTAGCAGCAATGCCAGCAATTGCAATCCCTGGAGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCCAAGGAGGATTGGATTCAAAGATAAATCTTGGATTAATAGGAAGTGGCACCTCACAGCATCTGCATCCCCTGAGCTCTAACTGGTCCCTGGGTGGTGCTGATAAGTATGGAATTCATTCAGCTCCAACGTTTCCTTTGGGTGGAAATAATTCTGCAATCTCGTATATGAGTTTGGCCAATCAGCTCCTTTCAGTTCCGAAGGGCTGGCGGAATGGTGACTGGCTTTGCAACTGTGGTTTCCATAATTACTCTTCACGTGCACAGTGCAAGAAGTGCAATGCTTCACCACAAGCACTTGGAATGAAACGATTAGCATCTGAAGAACTTGTTCATCACTGGGATAACAAGAGATTGAATATTGGACAGGCAAATGAGCCACAACAATCTTACCCAGGTTTTGAGCAGATGATGGGCTCCAGTAGTGACCCAAATGTGGGATTATATAATTCTTATCCCCACGAAAGTTCCAACGTAGCTCCAAATTTGGAAATGCCAATGCATTTTCCCCCACAAGCAACTGCACCAACGCTCCTAGGGAAAGGAGCAAAGCAGTGGCGCAACGGAGATTGGATGTGCACAAATTGCAATAATCATAATTATGCATCTCGCTTACAATGTAACAGATCTTATAACTCGATTGCGCCAGAAGTTCTTATTGATCTTGTCAGAAGAATGGCTGATTTGTATGTTTTACTGGTTGCTAACTTAGTAGGTGCAAGACTCAGAGAGATTCACTTTCTCTGCCCCTCAGTGCCATCTAAGCACATTTCTACAGACTTCGGATGGTGGTTGTTCTTATGCTGCAAGTTTCTTTCGATCCAATTTTTCGGATCTCTTAATCAACTCTTCTAG 1203 44.47 MDGGKEGMEGKVASQLAMSEGKEGDWECSGCKNRNYAFRSFCNRCKQPRLLVDNKTPPDSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAIPGASFPTYSHYFARTQGGLDSKINLGLIGSGTSQHLHPLSSNWSLGGADKYGIHSAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWLCNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHHWDNKRLNIGQANEPQQSYPGFEQMMGSSSDPNVGLYNSYPHESSNVAPNLEMPMHFPPQATAPTLLGKGAKQWRNGDWMCTNCNNHNYASRLQCNRSYNSIAPEVLIDLVRRMADLYVLLVANLVGARLREIHFLCPSVPSKHISTDFGWWLFLCCKFLSIQFFGSLNQLF 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4900811 4905668 - Lsi01G006090.1 Lsi01g00609 653267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00609 400 ProSitePatterns Zinc finger RanBP2-type signature. 69 88 IPR001876 -
Lsi01g00609 400 SUPERFAMILY Ran binding protein zinc finger-like 59 93 IPR036443 -
Lsi01g00609 400 Gene3D - 183 214 - -
Lsi01g00609 400 Gene3D - 17 50 - -
Lsi01g00609 400 Gene3D - 60 94 - -
Lsi01g00609 400 Gene3D - 298 329 - -
Lsi01g00609 400 SMART zf_4 67 91 IPR001876 -
Lsi01g00609 400 SMART zf_4 189 212 IPR001876 -
Lsi01g00609 400 SMART zf_4 305 329 IPR001876 -
Lsi01g00609 400 SMART zf_4 24 48 IPR001876 -
Lsi01g00609 400 SUPERFAMILY Ran binding protein zinc finger-like 297 326 IPR036443 -
Lsi01g00609 400 Pfam Zn-finger in Ran binding protein and others 22 49 IPR001876 -
Lsi01g00609 400 Pfam Zn-finger in Ran binding protein and others 303 325 IPR001876 -
Lsi01g00609 400 Pfam Zn-finger in Ran binding protein and others 65 93 IPR001876 -
Lsi01g00609 400 ProSitePatterns Zinc finger RanBP2-type signature. 26 45 IPR001876 -
Lsi01g00609 400 ProSiteProfiles Zinc finger RanBP2 type profile. 22 51 IPR001876 -
Lsi01g00609 400 PANTHER OS04G0110600 PROTEIN 184 263 - -
Lsi01g00609 400 PANTHER ZINC FINGER PROTEIN 20 154 - -
Lsi01g00609 400 PANTHER ZINC FINGER PROTEIN 299 324 - -
Lsi01g00609 400 SUPERFAMILY Ran binding protein zinc finger-like 22 50 IPR036443 -
Lsi01g00609 400 ProSiteProfiles Zinc finger RanBP2 type profile. 65 94 IPR001876 -
Lsi01g00609 400 PANTHER ZINC FINGER PROTEIN 184 263 - -
Lsi01g00609 400 PANTHER OS04G0110600 PROTEIN 20 154 - -
Lsi01g00609 400 PANTHER OS04G0110600 PROTEIN 299 324 - -
Lsi01g00609 400 SUPERFAMILY Ran binding protein zinc finger-like 185 212 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00609 - - - csv:101203537 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00609 Lsi-Chr1:4900811 Lsi08g01180 Lsi-Chr8:20409473 6.56E-07 dispersed
Lsi01g00609 Lsi-Chr1:4900811 Lsi06g00946 Lsi-Chr6:19397450 4.39E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1104 . . . Bda10g00180 . . . Bma15g00948 . . . Cma07g00432 . Car07g00381 Sed14g1183 Cpe19g00853 . Bhi03g00876 Tan03g2064 Cmetu04g2634 . Hepe04g1584 . . Cla01g01972 Cam01g2064 Cec04g1723 Cco04g1789 Clacu01g2085 Cmu01g1962 Cre04g1636 Cone8ag0845 . . . Lsi01g00609 . . Cme08g00918 . . . . . . . . . . Cmo07g00431 . . . . . . . . . . . . . . . . . . . . . Csa06g03316 Chy02g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010373 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00609 Lsi_Chr01 FPKM 35.639194 34.504097 36.046131 31.666327 66.297836 59.266197 56.135506 1.718619 1.625743 1.313788