Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00616 ATGAAGCGGTCGAGGAAATCAAAGGGTGTTTCGTGGGCTCATGGAGTTAATCTTTGTCAGGTGAGGCTATTTTCATCAGAGGACTGTCCTTCAAAAGTTGGCCTGAAATCTCCAGATCATCTCCAAGCAAAAACTCCACGGATGTTGCATCCTTATACTGCCGAGTTTAACGATTGCCCTCCCGGATTTGAGGTTACTCCTTTGGGGAACCAATTAGCAGATCTGTCCTGCAGCCCTTTGGTTAAGTGGAAGTTCCCTCTCAAGTTTGTTATGAATCCCAACTGGTGTGTGAGAGCAGGAGAGGAAAGTAAAGAGGTAGAATCTCAGAAGTTGAGGGAAATGAGATTGCTCGAAGCAGTTTATCCCCGAGCGTCTGCTATTCCTCCAGGTGCGAGCGTTTCTACTGATATTGAAGATGAGCTTTATGACGATAGCCTTACTCCTCTTGTCCCTATTATTCCTATTGAAGAAGATGAGTGTGAAGATTTAGGTTCAGATTCAGCTGTCCCAGGAAACTTCTCTGCAAGCTCTCTGTCGAAGGCTTCCAACTTGCCGTTGGAACCTTCAATCGCCATAAGTACTATCGAAACATCTGCAGGTGAAAGGCCTATCGAGAAGTTAGCTGACGTTGGTGTGGATGTAGCTGTTGCTGCCTCTACTGCATATGCAGTATTAACGAAAAGCATGGAGCAGGGAAGCATGATCGACACGAATTTGCTTATTAAAATTTTCAGTGACCCGAAAATGATCCAGAATTTGTCCAATAGCCCTCTATCCGTAGCAGTCTCAGGGAGCCCACCACCAATATCTTTGTCAAAGCCAGTGAGTGAATCAATTTCTTTGTCTCTTCCAAAATCCAATACGATACCAAGAGTGTCAAATGGATTCCCATCGACAGTCACTGCTGCTCTTCCTCCGTCTAATGTAAACCTAGTCGCAGTTCCCAGCAACTTACCAGTTCCAGACCCCAACGAGGTAAAAATTACCGTACAACACGCTGGGAACTATTCCAAAATAGGTTCAACTCCGGTGCAGGCGAACATCTCGCTGGTAAGTTCAGTGAGAAAAGAAGCTCAGCAAATGAAGGATCTTAGCTATTATAAGAACTTAGTTAGACAACATGGAGACCAGAGAGACTTTAAGAAACAGAAACTTGGACAACAAGATGGCAATAATTACAATCATCATAATCTGAATATGGTAAATGAGATGAAAGCAGAAAACTTGAAACCCAAGAAACAATGCATTTACTTTAATGGCCCAAAAGGGTGTCGAAATGGCGTTAATTGCCAATTCAAACATGATATTACACTTAAGAATCAAAACACTAAGAGAATGAAACCGTTTGGTGAAGTAACAAGGAAGACTTAA 1371 42.96 MKRSRKSKGVSWAHGVNLCQVRLFSSEDCPSKVGLKSPDHLQAKTPRMLHPYTAEFNDCPPGFEVTPLGNQLADLSCSPLVKWKFPLKFVMNPNWCVRAGEESKEVESQKLREMRLLEAVYPRASAIPPGASVSTDIEDELYDDSLTPLVPIIPIEEDECEDLGSDSAVPGNFSASSLSKASNLPLEPSIAISTIETSAGERPIEKLADVGVDVAVAASTAYAVLTKSMEQGSMIDTNLLIKIFSDPKMIQNLSNSPLSVAVSGSPPPISLSKPVSESISLSLPKSNTIPRVSNGFPSTVTAALPPSNVNLVAVPSNLPVPDPNEVKITVQHAGNYSKIGSTPVQANISLVSSVRKEAQQMKDLSYYKNLVRQHGDQRDFKKQKLGQQDGNNYNHHNLNMVNEMKAENLKPKKQCIYFNGPKGCRNGVNCQFKHDITLKNQNTKRMKPFGEVTRKT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4933946 4937945 - Lsi01G006160.1 Lsi01g00616 653274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00616 456 ProSiteProfiles Zinc finger C3H1-type profile. 409 437 IPR000571 GO:0046872
Lsi01g00616 456 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 447 - -
Lsi01g00616 456 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00616 - - - csv:101202975 691.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00616 Lsi-Chr1:4933946 Lsi05g00961 Lsi-Chr5:16766505 1.39E-11 dispersed
Lsi01g00616 Lsi-Chr1:4933946 Lsi01g00623 Lsi-Chr1:5027254 1.51E-166 proximal
Lsi01g00616 Lsi-Chr1:4933946 Lsi08g01336 Lsi-Chr8:21662307 1.17E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1095 . . . . . . . Bma15g00949 . . Cma03g00697 Cma07g00438 Car03g00641 Car07g00386 . Cpe19g00848 Cpe10g00653 Bhi03g00882 . . . . . . Cla01g01966 Cam01g2058 Cec04g1716 Cco04g1782 Clacu01g2079 Cmu01g1956 Cre04g1630 . . . . Lsi01g00616 . . Cme08g00913 . . . . Bpe10g00150 . . . . Cmo03g00724 Cmo07g00436 . . . . . . . . . . . . . . . . . . . . . Csa06g03311 Chy02g00586 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002760 0 3 0 1 1 2 3 2 2 2 2 2 3 2 2 3 2 0 3 2 2 1 2 2 2 2 2 2 3 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24592 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00616 Lsi_Chr01 FPKM 28.464436 34.493965 27.561712 30.160742 27.783436 27.333389 27.377621 36.579006 38.293301 35.711342