Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00619 ATGAAGCCTCTTCTGTTATTTTTTGCTCTGCTCTGCGGTGGTTTCTTTTCCTCCTCCGCCGACACCAGCGCCCAAACCCTACTGGAGATTCAGGCATTGATGTCCTTTAAACTTAATCTTCATGATCCTCTTGGTGCATTGACTGATTGGGATTCTTCCACCCCATTGGCGCCATGTGACTGGCGGGGTGTTATTTGTACTAATAATCGAGTCACTGAGCTCCGTTTGCCTCGTCTTCAACTCTCCGGCCGATTGACCGATCAGTTGGCTAATTTGCGGATGCTGCGGAAGTTCAGTATCCGCTCTAATTTCTTCAATGGTACGATTCCATCTTCTTTGTCCAAATGTGCGTTGCTGCGTTCTCTTTTCTTGCAGTATAATTTGTTTTCCGGTGGCCTTCCGGCGGAGTTTGAGAACTTGACTAATCTACATATACTAAACGTGGCGGAGAATCGCCTCTCTGGTGTGATCTCCAGCGACCTTCCGGATAGTTTGAAATATCTCGATCTTTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGTATTGTGAACATGACGAAGCTTCAGGTCGTTAATCTCTCTTTCAATAGGTTCGGCGGGCAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTCAACATCTCTGGCTAGACCACAATGTAATAGAAGGAACGTTGCCTTCGGCTCTGGCGAATTGTTCGTCGCTTGTTCATTTGAGCGTCGAGGGAAATGCGCTCCAAGGCGTAATTCCGGCTGCCATTGGAGCTCTTCCGAATCTTCAAGTTATTTCCCTCTCGCAGAATGGTTTCTCTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTCTCGTCGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGACAGCGACGTGTTTTAGTGCTTTACAGGTCCTCGATATTCAACACAATCAGATAAGGGGAGAGTTCCCCCTGTGGTTAACGGGCGTTTCCACTTTAACAGTCTTGGATTTTTCTGTCAATCATTTCTCCGGCCAGATTCCGCCTGGGATTGGGAATCTTTCGGGATTACAAGAGCTCAGAATGGCGAATAATTCGTTTCACGGCGCGATTCCGTTAGAAATCAAGAACTGCGCCACGATATCTGCTATTGATTTTGAAGGGAATCGCTTAACCGGGGAGATTCCGTCGTTTTTGGGTTATATGAGAGGTTTGAAGCGGTTGTCTCTCGGTGGAAATAGTTTTTCCGGCACTGTTCCGGCCAGTTTGGGAAATCTTTTGGAGCTTGAAATCTTGAATTTAGAGGACAATGGCTTGAACGGAACCCTTCCGCTGGAGCTAATGGGGCTTGGGAATTTAACAGTAATGGAACTCGGTGGGAACGAATTTTCCGGTGAGGTTCCGACTGGTATTGGCAACCTCAGTCGTCTTGAGATTTTGAATCTCAGTGCTAATAGTCTTTCTGGGATGATTCCGTCCAGTCTTGGTAATCTCTTCAAGCTAACCACTCTGGACTTGAGCAAACAAAATCTCTCTGGGGAGTTGCCATTTGAGCTCTCTGGTTTGCCTAATTTGCAGGTAATTGCTCTACAGGAAAACAAGTTATCTGGGAATGTTCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCTCTATTTGAATCTAAGTTCAAACGGATTTTTCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCGCTTGTTTCTCTATCATTATCAGACAATCACATTTCCGGGTCAATCCCTTCAGAGCTTGGTAACTGCTCTGATCTAGAAAGTTTGGAGGTCCGTTCAAATGCGCTTTCAGGCCATATTCCGGCGGATCTATCTCGTTTATCTCATCTGCAAGAGCTCGATTTGGGTAGGAATAATTTTACTGGCGAAATCCCAGAAGAGATCTCAAGTTGCTCGTCTTTAGAATCTCTCCGTCTGAACTCGAATCATCTTTCCGGTCCCATACCGGAGTCGTTGTCGGAGCTCTTAAACTTAACCACCCTGGACCTCTCATCCAACAATCTGAGTGGTGTTATCCCTGCTAATCTTAGCTCCATTACTGGATTGGTGAGCTTAAACGTTTCGAGTAATAATCTAGAAGGAGAAATTCCATCCTCCTTAGGCTCCAGATTCAACAGCTCATCTGTGTTTGCTAATAATTCTGAATTATGTGGGAAACCACTGGCTCGGCATTGTAAGGATACAGAGAAAAAGGATAAAATGAAGAGATTAATTCTATTCATTGCAGTGGCAGCCAGTGGAGCTTGCCTCTTGACTTTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGGAAGAGGCTCAAAGAGAGGGCGTCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCAGCAAGTGGTGGCCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATTACTCTAGCGGAAACAATCGAGGCGACAAGACAATTCGATGAAGAAAATGTTCTAAGCCGAACCCGTTATGGGTTGGTTTTCAAAGCTTGTTACAATGATGGCATGGTCCTCTCAATCCGCCGCCTCTCAAATGGTTCATTGGATGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTAGGCACCGCAATCTAACTGTTCTTCGTGGCTACTATGCTGGCCCTCCTGATATGCGGCTGTTAGTATACGATTACATGCCTAATGGGAACCTTGCCACTCTTCTTCAGGAAGCATCTCACCAAGATGGTCATGTTCTAAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATTGCCCGTGGCTTAGCCTTTCTCCATTCATCTTCCATTATCCATGGAGATGTCAAGCCACAAAGCGTTCTATTCGACGCTGATTTTGAAGCTCATTTGTCTGATTTCGGCCTAGACCGACTAACCATTGCAGCCTCCGCCGAAGCATCCACATCTACTTTAGTGGGCACATTAGGCTACATTGCCCCGGAAGCAGTGTTGACAGGGGAAGCCACAAAGGAATCTGATGTCTACAGCTTTGGCATTGTGTTGCTAGAGATTCTAACAGGGAAGAAACCAGTGATGTTCACAGAAGATGAAGATATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTCTTAGAACCAGGTTTACTTGAGCTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGATTACTTTGCACCGCACCGGATCCTCGTGATCGGCCGACGATGTCCGATATTGTTTTCATGCTTGAAGGTTGCCGTGTCGGACCCGACATCCCTTCCTCCGCCGATCCCACCTCCCAACCGTCACCGGCGTAA 3396 46.35 MKPLLLFFALLCGGFFSSSADTSAQTLLEIQALMSFKLNLHDPLGALTDWDSSTPLAPCDWRGVICTNNRVTELRLPRLQLSGRLTDQLANLRMLRKFSIRSNFFNGTIPSSLSKCALLRSLFLQYNLFSGGLPAEFENLTNLHILNVAENRLSGVISSDLPDSLKYLDLSSNAFSGQIPRSIVNMTKLQVVNLSFNRFGGQIPASFGELQELQHLWLDHNVIEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALPNLQVISLSQNGFSGSVPYSMFCNVSSHAPSLRIVQLGFNAFTDIVKPQTATCFSALQVLDIQHNQIRGEFPLWLTGVSTLTVLDFSVNHFSGQIPPGIGNLSGLQELRMANNSFHGAIPLEIKNCATISAIDFEGNRLTGEIPSFLGYMRGLKRLSLGGNSFSGTVPASLGNLLELEILNLEDNGLNGTLPLELMGLGNLTVMELGGNEFSGEVPTGIGNLSRLEILNLSANSLSGMIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGNVPEGFSSLVGLLYLNLSSNGFFGQIPSNYGFLRSLVSLSLSDNHISGSIPSELGNCSDLESLEVRSNALSGHIPADLSRLSHLQELDLGRNNFTGEIPEEISSCSSLESLRLNSNHLSGPIPESLSELLNLTTLDLSSNNLSGVIPANLSSITGLVSLNVSSNNLEGEIPSSLGSRFNSSSVFANNSELCGKPLARHCKDTEKKDKMKRLILFIAVAASGACLLTLCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTIAASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4972022 4975417 - Lsi01G006190.1 Lsi01g00619 653277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00619 1131 SMART LRR_typ_2 258 282 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 528 551 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 186 209 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 408 432 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 672 696 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 624 648 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 210 233 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 140 164 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 576 600 IPR003591 -
Lsi01g00619 1131 SMART LRR_typ_2 480 503 IPR003591 -
Lsi01g00619 1131 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1127 - -
Lsi01g00619 1131 Gene3D Ribonuclease Inhibitor 250 353 IPR032675 -
Lsi01g00619 1131 Gene3D Ribonuclease Inhibitor 162 249 IPR032675 -
Lsi01g00619 1131 Gene3D Ribonuclease Inhibitor 354 452 IPR032675 -
Lsi01g00619 1131 MobiDBLite consensus disorder prediction 791 818 - -
Lsi01g00619 1131 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Lsi01g00619 1131 Gene3D Transferase(Phosphotransferase) domain 1 914 1117 - -
Lsi01g00619 1131 Pfam Protein kinase domain 848 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00619 1131 SUPERFAMILY L domain-like 28 303 - -
Lsi01g00619 1131 SUPERFAMILY Protein kinase-like (PK-like) 817 1119 IPR011009 -
Lsi01g00619 1131 Gene3D Phosphorylase Kinase; domain 1 811 913 - -
Lsi01g00619 1131 MobiDBLite consensus disorder prediction 796 810 - -
Lsi01g00619 1131 ProSiteProfiles Protein kinase domain profile. 838 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00619 1131 Gene3D Ribonuclease Inhibitor 28 161 IPR032675 -
Lsi01g00619 1131 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Lsi01g00619 1131 Pfam Leucine rich repeat 650 709 IPR001611 GO:0005515
Lsi01g00619 1131 Gene3D Ribonuclease Inhibitor 453 751 IPR032675 -
Lsi01g00619 1131 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515
Lsi01g00619 1131 SUPERFAMILY L domain-like 497 738 - -
Lsi01g00619 1131 SUPERFAMILY RNI-like 310 567 - -
Lsi01g00619 1131 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00619 Lsi-Chr1:4972022 Lsi07g00627 Lsi-Chr7:6708880 5.49E-40 dispersed
Lsi03g00261 Lsi-Chr3:3236746 Lsi01g00619 Lsi-Chr1:4972022 4.50E-30 dispersed
Lsi03g02248 Lsi-Chr3:33456316 Lsi01g00619 Lsi-Chr1:4972022 1.02E-40 transposed
Lsi05g00710 Lsi-Chr5:9575682 Lsi01g00619 Lsi-Chr1:4972022 2.11E-08 transposed
Lsi09g00720 Lsi-Chr9:8278768 Lsi01g00619 Lsi-Chr1:4972022 7.96E-157 transposed
Lsi01g00619 Lsi-Chr1:4972022 Lsi07g00223 Lsi-Chr7:2399854 4.16E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83261 PF00069 Pkinase 6.10E-35 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00619 - - csv:101203208 2060.8