Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00620 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTGCAATCTGTGACACAAAGGTACACATGTGCAATAAGCTTGCTAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGACGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTTGGAGGTAAAAGGATGCACAAGAGATACCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATAAACAAAATGATGTGAAGGACCTAAATGTAAAACCGATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCATGAAGAATTGAGGGTCTCAGATGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTAAACATCTAA 507 41.22 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDVKDLNVKPMEQVEKVRSQNEERGEIEKHEELRVSDVKKDYSNGDGHSKRPNKVIDLNI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4986878 4988713 + Lsi01G006200.1 Lsi01g00620 653278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00620 168 CDD Bbox1_BBX-like 4 47 - -
Lsi01g00620 168 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Lsi01g00620 168 MobiDBLite consensus disorder prediction 121 161 - -
Lsi01g00620 168 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Lsi01g00620 168 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Lsi01g00620 168 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 167 - -
Lsi01g00620 168 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi01g00620 168 MobiDBLite consensus disorder prediction 121 168 - -
Lsi01g00620 168 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 167 - -
Lsi01g00620 168 Gene3D Classic Zinc Finger 1 95 - -
Lsi01g00620 168 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi01g00620 168 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00620 - - - csv:101206016 334.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00620 Lsi-Chr1:4986878 Lsi07g00290 Lsi-Chr7:3106367 1.02E-24 dispersed
Lsi07g00267 Lsi-Chr7:2909441 Lsi01g00620 Lsi-Chr1:4986878 6.18E-72 transposed
Lsi01g00620 Lsi-Chr1:4986878 Lsi10g00420 Lsi-Chr10:6364840 1.07E-37 wgd
Lsi01g00620 Lsi-Chr1:4986878 Lsi08g01348 Lsi-Chr8:21779307 3.75E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24594 PF00643 zf-B_box 3.60E-06 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00620 Lsi_Chr01 FPKM 19.305593 22.41433 22.27338 22.121124 80.83709 79.453262 85.198051 32.566864 30.382978 30.493406