Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00621 ATGAAGCTGGGCCGAGGCCCAATGCTTCGTTTTGTTTGCAATACTAGACATGATTTATTGACATTGCTCGATGACTTGCTTCTAGGCATTGATTTCGGTTGCCTGTGTTTTGGAGTTAGCGTGGGAAGTGGGAAGACCAAGAAGCGAATTTCCGAACTGTGCAATACAAAACTTGGCATTAGAAATCTGAATTCTCACCACCTGTCTTCCTTCAATCGCGAAACCCACGGAACCGAAAAATCGAACCATCCAATTATCCAACCAAACCCCCAACGATGCAGAGATCCAGAAGACGCTGTGAGGGCACGGCTATGGGTGCCATCGTCCTCGATCTTCAACCCGGCCTTGGCCTCGGCCCCTTCAATCTCGGAACTTATGCGCCTCAGTTGTGTTGTTGTCCCAGGAATGCCAATTTGTGAAGCATTTGCACAAATAGAGCAGCGCCCTAACATCTATGACGTTGTCCATGTGAAATACTTCGACGAGGAGCCACTGAAACTCGATATCGTTATCAGCTTCCCAGACCATGGTTTTCATCTTCGCTTTGACCCGTGGTCACAGAGGCTACGTCTTATTGAAATATTTGATGTAAAGCGACTTCAAATGCGTTATGCTACTTCTCTGATTGGGGACTTTCATTTGCATTTCCAATACCAGGCCAATATACAGATTGTTGCCATGATGGAGAAGAGTTCTAAGGAGAATAACTTGCTACTCTTAACTACCAAAGCGGAGCTACCTTTGGAGTTTCCTGATGGTACGACCCCAGTTGCTTGTCGAGTCTCCATATTTGATAGTTCTACAGTAAAAAAGGTTGGAGTAGGAGCCTTAATGGATAAGGCTTCTGCTCCCCCATTGCCTGCTAGCAGCCTTTATATGGAGGAGGTCCATGTTAAGCTTGGTGATGAATTATACTTTGCTGTGGGTAGTCAGCATATTCCTTTTGGTGCATCACCACAGGATATTTGGACAGAATTAGGCCGCCCTTGTGGGATCCATCAAAAACAGGTAGATCAAATGGTTATTCATTCTGCTTCAGATCCCCGTCCCAGGACAACCCTTTGTGGTGATTACTTCTACAACTATTTTACCCGTGGTTTGGACATCTTATTTGATGGGCAGACTCATAAAATCAAGAAGTTTGTTTTGCATACCAATTACCCTGGCCATGCTGATTTCAATTCATACATCAAGTGCAATTTTGTAATCCATGGTTCTTTTGATGAAACGGACAGTAAAAACTCTATAACCCCTAGCACCAAGTGGGAAGATGTGAAGGAAATCCTCGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGTTCAACAAACAATCCTTTTGGATCTACTTTCGTCTATGGCTATCAGAACGTTGCATTTGAGTTCATGCCGAGGTTAAACGACAACTCTAGCGATCACTGTGGGCAGCTCGATGGAATACATGTGCCTTTGTTGAAAGCATCAATTCAAGTCGAGTCTGTTTTGGATAACTTATCATAG 1500 44.53 MKLGRGPMLRFVCNTRHDLLTLLDDLLLGIDFGCLCFGVSVGSGKTKKRISELCNTKLGIRNLNSHHLSSFNRETHGTEKSNHPIIQPNPQRCRDPEDAVRARLWVPSSSIFNPALASAPSISELMRLSCVVVPGMPICEAFAQIEQRPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMRYATSLIGDFHLHFQYQANIQIVAMMEKSSKENNLLLLTTKAELPLEFPDGTTPVACRVSIFDSSTVKKVGVGALMDKASAPPLPASSLYMEEVHVKLGDELYFAVGSQHIPFGASPQDIWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCGDYFYNYFTRGLDILFDGQTHKIKKFVLHTNYPGHADFNSYIKCNFVIHGSFDETDSKNSITPSTKWEDVKEILGDCGRAAIQTQGSTNNPFGSTFVYGYQNVAFEFMPRLNDNSSDHCGQLDGIHVPLLKASIQVESVLDNLS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4988487 4995259 - Lsi01G006210.1 Lsi01g00621 653279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00621 499 Pfam Phagosome assembly factor 1 241 464 IPR005373 -
Lsi01g00621 499 Pfam Phagosome assembly factor 1 135 219 IPR005373 -
Lsi01g00621 499 PANTHER UPF0183 PROTEIN 135 210 IPR039156 -
Lsi01g00621 499 PANTHER UPF0183 PROTEIN C16ORF70 135 210 IPR005373 -
Lsi01g00621 499 PANTHER UPF0183 PROTEIN 240 463 IPR039156 -
Lsi01g00621 499 PANTHER UPF0183 PROTEIN C16ORF70 240 463 IPR005373 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00621 - - - csv:101205551 583.563
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1078 . . . . . . Bma09g00101 . . . . Cma07g00444 . Car07g00391 . Cpe19g00844 . Bhi03g00890 . . . . . . Cla01g01961 Cam01g2051 Cec04g1709 Cco04g1774 Clacu01g2072 Cmu01g1949 Cre04g1624 . . Cone6ag1665 Cone9ag1587 Lsi01g00621 . . Cme08g00908 Blo05g00822 . . . . . . . . . Cmo07g00441 . . . . . . . . . . . . . . . . . . . . . Csa06g03303 Chy02g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010040 0 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00621 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.117292 0.0 0.0