Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00626 ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCTCAAAACGCTCCACCCCCCTCTTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGAAGAAGAAGAGGTAGAGGGTGCAGAAAAAAACAACCACTCCCCTGTTTCTGCTCCCCTGCAACTTCAAAAACATCACGACAGCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCGCCACCGCCCTCCTCTGTTTTCTTGACAGAGAAACCCATTAATTACCAAAAGGAAACAACCCACCACGTCCATCCCCTTCCGAATTTTGAATCTAATCTCAGTACATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTTCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCAGAGGAGGGCTCCGGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACACCCCAATGGCGAGCCGGTCCACTAGGAGCAAAGAGTCTATGTAATGCGTGCGGCGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCGGGTCTGGACCCGACCCTGTAG 885 50.4 MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPQNAPPPSSDYIFVDQLLNFSNEEEEEEVEGAEKNNHSPVSAPLQLQKHHDSDQNSNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPSSVFLTEKPINYQKETTHHVHPLPNFESNLSTFPSKPRSKRAKISGRVWSLTNSISSPSLYSPPAKKPKKNPAEEGSGRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPTL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5038133 5039017 - Lsi01G006260.1 Lsi01g00626 653284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00626 294 MobiDBLite consensus disorder prediction 151 176 - -
Lsi01g00626 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 272 - -
Lsi01g00626 294 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 MobiDBLite consensus disorder prediction 152 168 - -
Lsi01g00626 294 CDD ZnF_GATA 215 263 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 PIRSF Txn_fac_GATA_plant 14 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi01g00626 294 MobiDBLite consensus disorder prediction 68 97 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 37 187 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 186 285 - -
Lsi01g00626 294 MobiDBLite consensus disorder prediction 189 216 - -
Lsi01g00626 294 Gene3D - 207 286 IPR013088 GO:0006355|GO:0008270
Lsi01g00626 294 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 MobiDBLite consensus disorder prediction 52 97 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 37 187 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 186 285 - -
Lsi01g00626 294 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 ProSiteProfiles GATA-type zinc finger domain profile. 210 246 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00626 Lsi-Chr1:5038133 Lsi07g00224 Lsi-Chr7:2415732 1.08E-68 dispersed
Lsi01g00626 Lsi-Chr1:5038133 Lsi10g00416 Lsi-Chr10:6313348 1.85E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24596 PF00320 GATA 1.20E-16 CL0167 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00626 - K21630 bhj:120072849 484.567