Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00626 ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCTCAAAACGCTCCACCCCCCTCTTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGAAGAAGAAGAGGTAGAGGGTGCAGAAAAAAACAACCACTCCCCTGTTTCTGCTCCCCTGCAACTTCAAAAACATCACGACAGCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCGCCACCGCCCTCCTCTGTTTTCTTGACAGAGAAACCCATTAATTACCAAAAGGAAACAACCCACCACGTCCATCCCCTTCCGAATTTTGAATCTAATCTCAGTACATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTTCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCAGAGGAGGGCTCCGGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACACCCCAATGGCGAGCCGGTCCACTAGGAGCAAAGAGTCTATGTAATGCGTGCGGCGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCGGGTCTGGACCCGACCCTGTAG 885 50.4 MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPQNAPPPSSDYIFVDQLLNFSNEEEEEEVEGAEKNNHSPVSAPLQLQKHHDSDQNSNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPSSVFLTEKPINYQKETTHHVHPLPNFESNLSTFPSKPRSKRAKISGRVWSLTNSISSPSLYSPPAKKPKKNPAEEGSGRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPTL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5038133 5039017 - Lsi01G006260.1 Lsi01g00626 653284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00626 294 MobiDBLite consensus disorder prediction 151 176 - -
Lsi01g00626 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 272 - -
Lsi01g00626 294 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 MobiDBLite consensus disorder prediction 152 168 - -
Lsi01g00626 294 CDD ZnF_GATA 215 263 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 PIRSF Txn_fac_GATA_plant 14 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi01g00626 294 MobiDBLite consensus disorder prediction 68 97 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 37 187 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 186 285 - -
Lsi01g00626 294 MobiDBLite consensus disorder prediction 189 216 - -
Lsi01g00626 294 Gene3D - 207 286 IPR013088 GO:0006355|GO:0008270
Lsi01g00626 294 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 MobiDBLite consensus disorder prediction 52 97 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 37 187 - -
Lsi01g00626 294 PANTHER GATA TRANSCRIPTION FACTOR 186 285 - -
Lsi01g00626 294 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Lsi01g00626 294 ProSiteProfiles GATA-type zinc finger domain profile. 210 246 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00626 - - K21630 bhj:120072849 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00626 Lsi-Chr1:5038133 Lsi07g00224 Lsi-Chr7:2415732 1.08E-68 dispersed
Lsi01g00626 Lsi-Chr1:5038133 Lsi10g00416 Lsi-Chr10:6313348 1.85E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01074 CCT,ECH 101 351 C2C2-Gata Transcription Factor Family AT5G25830 57.0 2.8e-69 259.2
Lsi04g02328 CCT,ECH 39 352 C2C2-Gata Transcription Factor Family AT5G25830 50.9 6.3e-69 258.1
Lsi05g01573 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 60.4 8.4e-37 150.2
Lsi07g00224 . 21 299 C2C2-Gata Transcription Factor Family AT5G66320 50.5 6.7e-66 248.1
Lsi01g00626 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.8 1.2e-42 170.2
Lsi07g01258 . 72 580 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.9e-128 456.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24596 PF00320 GATA 1.20E-16 CL0167 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00626 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.656714 0.0 0.0