Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00627 ATGGAATTCTCTCTTCATTTCTTCTTCCTCTTTCTATTTTCATCTCTTTTCCTTCGTCTCTCTAATTCATGTCATCCCACTGACAAACAAGCACTTCTCCACTTTAAAACCAAAATCACTTCTGACCCTTCACAGCTACTGCTTTCTTGGAATTCCGCCACCGACTGCTGCTCCTCCTGGGACGGCGTCGGCTGTGATTCCTCCGGCAGAGTCACCAACCTCACCCGCCCGGGAATTGTCTCCGGCACCGACTTCATCGCTGATACTTTCATGTCTGGATATCTCTCCCCTTTTCTTGGAAACTTGTCGTCTCTTCAATTTCTGGACCTCAGCAATCTCAAACACATCAAGGGTCGAATTCCTTTGGAATTTGGCAAGTTATCACGACTCACCTATTTGTTTCTCGATTCAAATAAGCTCATGGGTTCGATTCCTACAACTTTTGGGTGTCTTTTTCGATTGGAAAAACTCTATCTTGGCAACAATTTCCTCTCTGGAATCATCCCTCCCTCAATTTTTAGCCATTTCAAGTGTCTTTCAGAATTGGGTCTTTCCGGAAATAGACTATCTGGGTCGATTCCTAATACAATTGGGAAGCTAACTCAAGTCAAAAATCTCGATCTACATGCCAACAATTTCTCAGGAAGCATTCCTAAGAGCATTGGTAACCTTAAAAGTCTCAGGTATCTCGATTTGTCTGAAAATGAGATAACAGGGAGTATTCCTAATTTGATTGGTGAACTCTCTGAGTTGGTTTTACTTTACCTTAATCAGAACAAGATTACCGGAAGTATTCCCTCATCGATTGCCGGACTTAGTTCTCTGATATTCTGCCGTTTGTCGGAAAACCGGCTAAGTGGTCGGTTACCGGCGTCCATCGGTAAGCTTGAAAAGATACAGAGACTGATTCTTGAGAATAACAAGCTTACCGGGAAATTGCCTTCTTCTATTGGCCGTTTGACAACGCTAACTGACTTGTTCTTCTCTAACAATCTTTTTACCGGCAAGATCCCCAAGACGTTTGGAAATTTGGAAAACCTTCAAACTCTGGACTTGTCGAGAAACTTGCTTTCTGGTGGGATTCCTCATCAGTTATCCAAATTGCAGAGATTACAGACCTTGGATTTTTCCTTCAATCCTCTTGGGTTGCGAAGCATACCTAATTGGTTTGCAAAGATGAAACTTTTCAGGCTAATTTTGGCTAAAACAGGGATTGAAGGGCAGCTTCCAAAATGGTTGTCTTCATCCTCAATATCGGTTCTTGATTTGTCGAGTAATCGATTAACAGGGCCGCTGCCCCATTGGATTGGAAATATGACCAATCTTTCATTCCTTAACCTTTCAAACAACGGATTTCATTCATCAATCCCAGCTGAATTCAAAAACCTTTTACTGTTAATGGATCTTGATCTTCACTCGAACCACTTTACAGGGTGCCTTGACAACATATTTTCAAAAGGGGCTCAAGACCCACTTGGCCATTTCAATTCCATTGATGTTTCTGGCAATCATTTCAGTGGTTGTATTGATCAGAATATTGGAAACAGAGCAGCAATGTCTTCAATCAAATCGCTTGTTTTATCGAACAATGAATTGGAAGGGCATATCCCCAAGTCGTTGTCGGAACTTAGGGAATTGCAGGTGCTGGAGCTGGATGGAAACCGGCTTTCCGGTGAAATTCCGGCGGAGCTGGGAGATGCGGCAGAATTAACCACGATTTTGCTTTCGAAGAACAGACTATGTGGAGCAATTCCAATACAGGTGTTGAATTTGCAGAAGCTTTGGAAATTCGACGTGTCGGAAAATAGACTTTGTGGTGAAATTCCACCGCATAAAGCACATTTCCCTGTCTCCGCATTCAAACATAATCGTGGACTCTGTGGAACTCCACTTCCCCCCTGCAACCATTAG 1911 42.8 MEFSLHFFFLFLFSSLFLRLSNSCHPTDKQALLHFKTKITSDPSQLLLSWNSATDCCSSWDGVGCDSSGRVTNLTRPGIVSGTDFIADTFMSGYLSPFLGNLSSLQFLDLSNLKHIKGRIPLEFGKLSRLTYLFLDSNKLMGSIPTTFGCLFRLEKLYLGNNFLSGIIPPSIFSHFKCLSELGLSGNRLSGSIPNTIGKLTQVKNLDLHANNFSGSIPKSIGNLKSLRYLDLSENEITGSIPNLIGELSELVLLYLNQNKITGSIPSSIAGLSSLIFCRLSENRLSGRLPASIGKLEKIQRLILENNKLTGKLPSSIGRLTTLTDLFFSNNLFTGKIPKTFGNLENLQTLDLSRNLLSGGIPHQLSKLQRLQTLDFSFNPLGLRSIPNWFAKMKLFRLILAKTGIEGQLPKWLSSSSISVLDLSSNRLTGPLPHWIGNMTNLSFLNLSNNGFHSSIPAEFKNLLLLMDLDLHSNHFTGCLDNIFSKGAQDPLGHFNSIDVSGNHFSGCIDQNIGNRAAMSSIKSLVLSNNELEGHIPKSLSELRELQVLELDGNRLSGEIPAELGDAAELTTILLSKNRLCGAIPIQVLNLQKLWKFDVSENRLCGEIPPHKAHFPVSAFKHNRGLCGTPLPPCNH 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5050475 5052385 - Lsi01G006270.1 Lsi01g00627 653285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00627 636 SUPERFAMILY L domain-like 395 634 - -
Lsi01g00627 636 Gene3D Ribonuclease Inhibitor 384 636 IPR032675 -
Lsi01g00627 636 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Lsi01g00627 636 Gene3D Ribonuclease Inhibitor 193 289 IPR032675 -
Lsi01g00627 636 Gene3D Ribonuclease Inhibitor 25 192 IPR032675 -
Lsi01g00627 636 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 7 636 - -
Lsi01g00627 636 SMART LRR_typ_2 543 567 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 439 462 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 151 175 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 224 247 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 296 320 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 344 367 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 248 272 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 368 392 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 127 150 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 591 622 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 176 200 IPR003591 -
Lsi01g00627 636 SMART LRR_typ_2 463 486 IPR003591 -
Lsi01g00627 636 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Lsi01g00627 636 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Lsi01g00627 636 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Lsi01g00627 636 SUPERFAMILY RNI-like 108 480 - -
Lsi01g00627 636 PRINTS Leucine-rich repeat signature 227 240 - -
Lsi01g00627 636 PRINTS Leucine-rich repeat signature 344 357 - -
Lsi01g00627 636 SMART LRR_sd22_2 248 274 - -
Lsi01g00627 636 SMART LRR_sd22_2 320 346 - -
Lsi01g00627 636 SMART LRR_sd22_2 127 146 - -
Lsi01g00627 636 SMART LRR_sd22_2 176 208 - -
Lsi01g00627 636 SMART LRR_sd22_2 368 388 - -
Lsi01g00627 636 SMART LRR_sd22_2 224 246 - -
Lsi01g00627 636 Gene3D Ribonuclease Inhibitor 290 383 IPR032675 -
Lsi01g00627 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 636 - -
Lsi01g00627 636 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00627 - - - csv:101207198 1127.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00627 Lsi-Chr1:5050475 Lsi04g00493 Lsi-Chr4:4540822 3.45E-124 dispersed
Lsi07g00223 Lsi-Chr7:2399854 Lsi01g00627 Lsi-Chr1:5050475 2.23E-21 dispersed
Lsi10g01552 Lsi-Chr10:19943993 Lsi01g00627 Lsi-Chr1:5050475 8.31E-12 dispersed
Lsi01g00627 Lsi-Chr1:5050475 Lsi05g01810 Lsi-Chr5:25345800 1.12E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00627 Lsi_Chr01 FPKM 14.217669 16.614225 11.520263 12.323648 4.505828 4.16792 5.479718 0.456756 0.275576 0.232273