Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00630 ATGTTTCTCTGTCCTCTTCCCATATTATTCCTTCCTTTCTCACTCACCACAACCAAACTCCAACCTTCCTCGCTTTCATTTTCCCCTTCTCTCCTAATGGCTCTTGGAAGGCCCCGTAGTAGCAAGAGATCTTCCTCCTCTTCTTCCTATGCTTCCACCGTTACGACCATCGTCTTCTTAGCCTTATGTGTTCTCGGAGTATGGATGCTCACCTCCAACTCCGTTGTTCCCCCGCAAACCACCACTCGCACTTCTTCTGACTCCTCCTCCACAACCTCCACCGTTGCCACCATCACCGACTTTGCATCTTCCTCCGACGAACCTCAACTCCCTAAATCTGAGGATAAGGAGGCCACTCCCGCCTTCGAGGATAATCCTGGTGATCTCCCTCTTGATGCTATTAAATCTGATGATGCCGCTAATATTGTTAGCGACGATGCCAAATCTCGTGAGGATCATTCTAAGGACAATGCCAATGATGGGCAAGAATCTAGAGATAACAATGAGGCTCAATTGTCGGAAGAGAGCACAATGACTCAAAACCAACAAGTGGAAGCGACCCAAAAAATTGAGGAGAAATTAGATTTGGGAGGGAGCCAAGAACAAAATGCTAATTTATCTGATCAAAGCAATGAATCCGCAGAGCATGTGGAGTCCGATAATAGTAAATCCAATGATATACCGTTGGAAAATAATGCTCAAGAACAACAACAGCAACAACAACAAGTATCGGAAGAGCCTGAAAACAACGCTAGTACACAGGAAATCCAACAAGCAATTGCTAACGTAGAGCAACAACAAGCAACCGATATCCCAGAAATCAGTGGAGACTCTCAAAACGATCAACCGAAACTTGAAACTGAAGCTGAAAAAATCCAAGAACCTGAAATCCATAACCAGGATGATGACAAATCCCAACAACAAATACAACAGCAACAAGAACAGGACAACTCAAACACGAGCAACAACAGTGAAGAAACTACCTCATCAGAGAAAAATCAGCCACGAAAGAGACACCGACGCAACAAAAAGCCAACTGAGGATCAAGAGTCACAACAAACAGAATCCAAGGAGAGCCAAGAAGCCCCAAAGGACTCAAAAACAGAAATCAAAGTGGAAGAGACAGCCACAGCAGGGTCACTTGAGAGCTCAGTGATACCCAAAGAGTCGAAGGAATCCAAAAAGTCATGGTCAACACAGGCAGCGCAATCAGAGAACGAGAAGGATCGCCGACGAGAAGAATCGAGCAGTGACGGCAGCATCTATGGTTACACATGGCATCTTTGCAATGTCACGGCGGGAAGCGATTACATTCCCTGTTTGGATAATGAGAAAGCAATTAAGCAGTTGCGTACAACAAAACACTTCGAGCACCGGGAGAGACATTGCCCGGAGGAGGGACCTACTTGCCTGGTCTCACTCCCAGAGGGTTACAAAAGATCCATTGAATGGCCTAAAAGTAGAGACAAGATTTGGTATCACAATGTACCACACACAAAGCTTGCCGAAGTGAAAGGCCACCAAAATTGGGTCAAGGTCACCGGTGAGTTCTTGACATTCCCTGGCGGTGGCACCCAGTTCATCCACGGCGCTCTACACTATATAGATTTTCTTCAACAGTCGGTACCTGATATTGCATGGGGGAAGAGTACAAGAGTGATATTGGATGTAGGCTGTGGAGTTGCCAGCTTCGGCGGCTTTCTGTTTGAAAAAGATGTGCTTACGATGTCGTTTGCTCCAAAAGACGAGCATGAAGCTCAAGTCCAGTTCGCCCTTGAGAGGGGAATTCCAGCCATTTCTGCTGTAATGGGCTCACAGCGTCTGCCATTTCCAAGCATGGTTTTTGACATTATTCATTGTGCTCGATGTAGAGTGCCTTGGCATGTAGAAGGTGGAATGCTTCTTTTAGAATTAAATCGAGTGCTAAGGCCAGGGGGCTTTTTTGTTTGGTCTGCAACTCCCGTGTACCAGACCTTGGAGGAAGACGTTGAGATTTGGAAAGAAATGTCTGCTTTGACGAAGTCCATGTGTTGGGAGCTTGTGACAATTCAGAAGGACAAGCTGAACTCCATTGGGGCTGCCATTTACAGGAAACCAACCTCAAATGAATGCTACGATCAAAGAAAACACAAGCGTCCCCCCATGTGCAAAAATGACGATGATCCGAACGCAGCATGGTATGTGCCACTGCAGGCATGCATGCACCGTGCGCCAGTTGACAATACCGTGAGAGGAAGCACCTGGCCAAAACAATGGCCTCAGAGGTTGCAAGCACCACCTTACTGGCTGAACAGCTCCCAAATGGGGGTTTATGGCAAACCAGCTCCTCAAGATTTCTCAACTGATTATGAACATTGGAAAAGAGTTGTGAATAAAACTTACATGAATGGATTAGGCATAAATTTGTCCAACATTAGGAATGTGATGGATATGAGATCTGTTTATGGCGGATTTGCAGCAGCTCTAAGAGACCTTAAAGTATGGGTAATGAATGTGGTGAATATTGACTCTCCCGATACACTTCCTGTGATCTACGAGCGCGGTCTCTTTGGGATTTATCATGATTGGTGTGAATCCTTCAGCACATATCCAAGAACATATGATCTACTACACGCTGATCATCTTTTCTCAAAATTGAAAAAGAGGTGCAAACTACCTCCTGTCTTGGCAGAGGTCGATCGAATAGTAAGACCTGGAGGCAAATTGATCGTCCGAGATGAGTCCAGCACGATTGGAGAAGTGGAGAACTTGTTGAAGTCTCTTCGTTGGGAAGTTCACTTGACCTTCTCCAAAAACCAGGAAGGGCTGCTGAGTGCTCAGAAAGGTGATTGGCGACCGGATACTTATGCAGAGTCTTCCTGA 2862 45.91 MFLCPLPILFLPFSLTTTKLQPSSLSFSPSLLMALGRPRSSKRSSSSSSYASTVTTIVFLALCVLGVWMLTSNSVVPPQTTTRTSSDSSSTTSTVATITDFASSSDEPQLPKSEDKEATPAFEDNPGDLPLDAIKSDDAANIVSDDAKSREDHSKDNANDGQESRDNNEAQLSEESTMTQNQQVEATQKIEEKLDLGGSQEQNANLSDQSNESAEHVESDNSKSNDIPLENNAQEQQQQQQQVSEEPENNASTQEIQQAIANVEQQQATDIPEISGDSQNDQPKLETEAEKIQEPEIHNQDDDKSQQQIQQQQEQDNSNTSNNSEETTSSEKNQPRKRHRRNKKPTEDQESQQTESKESQEAPKDSKTEIKVEETATAGSLESSVIPKESKESKKSWSTQAAQSENEKDRRREESSSDGSIYGYTWHLCNVTAGSDYIPCLDNEKAIKQLRTTKHFEHRERHCPEEGPTCLVSLPEGYKRSIEWPKSRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSVPDIAWGKSTRVILDVGCGVASFGGFLFEKDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSMVFDIIHCARCRVPWHVEGGMLLLELNRVLRPGGFFVWSATPVYQTLEEDVEIWKEMSALTKSMCWELVTIQKDKLNSIGAAIYRKPTSNECYDQRKHKRPPMCKNDDDPNAAWYVPLQACMHRAPVDNTVRGSTWPKQWPQRLQAPPYWLNSSQMGVYGKPAPQDFSTDYEHWKRVVNKTYMNGLGINLSNIRNVMDMRSVYGGFAAALRDLKVWVMNVVNIDSPDTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKLPPVLAEVDRIVRPGGKLIVRDESSTIGEVENLLKSLRWEVHLTFSKNQEGLLSAQKGDWRPDTYAESS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5056626 5060554 - Lsi01G006300.1 Lsi01g00630 653288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00630 953 Gene3D Vaccinia Virus protein VP39 534 711 IPR029063 -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 304 329 - -
Lsi01g00630 953 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 436 940 IPR004159 GO:0008168
Lsi01g00630 953 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 459 704 IPR029063 -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 198 212 - -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 99 418 - -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 171 187 - -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 343 372 - -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 139 170 - -
Lsi01g00630 953 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 336 951 IPR004159 GO:0008168
Lsi01g00630 953 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 40 318 IPR004159 GO:0008168
Lsi01g00630 953 PANTHER METHYLTRANSFERASE PMT27-RELATED 336 951 - -
Lsi01g00630 953 PANTHER METHYLTRANSFERASE PMT27-RELATED 40 318 - -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 75 94 - -
Lsi01g00630 953 Coils Coil 249 269 - -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 224 282 - -
Lsi01g00630 953 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 752 924 IPR029063 -
Lsi01g00630 953 MobiDBLite consensus disorder prediction 283 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00630 - - - cmo:103485101 1613.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00630 Lsi-Chr1:5056626 Lsi01g01168 Lsi-Chr1:9904587 0 dispersed
Lsi01g00630 Lsi-Chr1:5056626 Lsi03g00357 Lsi-Chr3:4217809 7.17E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1064 . . Bda04g00033 Bda10g00167 Bpe15g00369 . Bma09g00097 Bma15g00971 . . Cma03g00706 Cma07g00451 Car03g00647 Car07g00398 Sed14g1170 Cpe19g00838 Cpe10g00647 Bhi03g00898 Tan03g2044 Cmetu04g1166 . Hepe04g1565 . . Cla01g01953 Cam01g2042 Cec04g1700 Cco04g1765 Clacu01g2064 Cmu01g1941 Cre04g1615 . . Cone6ag1660 . Lsi01g00630 . . Cme08g00900 Blo05g00816 Blo06g00330 . . Bpe10g00139 Bpe06g00031 . . . Cmo03g00732 Cmo07g00448 . . . . . . . . . . . . . . . . . . . . . Csa06g03295 Chy02g00601 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00630 Lsi_Chr01 FPKM 9.994506 10.21869 17.019459 20.84766 12.100883 11.619618 12.063392 10.791731 9.842927 10.028136