Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00631 ATGTCTGGCTTTTTCACTTTAGGCGGCGGTGGAGGAGGAAGAGAACACCACCAAGATCAAGACCAACAAAACAACAACCGCTCCAACGAAATTATTCCCCCGCCGGATAGCAGTTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAGCAGCAGCAGCAACATCATCACCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAAACACCATCCCGGAGTACTCCTTACTCGGCCCCTCTAGGCGTTCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCGGGATCCGGTGGAGGTGGAATAAGTTGCCAAGATTGTGGCAACCAAGCGAAGAAAGACTGCAGCCATATGCGGTGTAGAACATGCTGCAAGAGCCGAGGATTCCATTGCGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTGGCTGCCTTACAAACCCATCATCAACACCAACTCCATCTTCATGGAGACAATAATCCGAAACGCCACAGAGATTATAACCCCACTTCCTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTCGAAATTGGGAATTTCCCACCCGAGTTAAACTCTCCGGCTGTCTTCCGTTGCGTTCGTGTCACCTCTACCGACGATACCGACGATCAATACGCCTATCAAACGGCCGTAAATATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACCTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAAATGCAACCACTGAATTTCATCGCTGCTGCTGCTGATGCCACCACCGCAAGCGGTGGTTCCACAGCCGCATTACCCTTGATGGATCCCTCTTCTTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1008 50.2 MSGFFTLGGGGGGREHHQDQDQQNNNRSNEIIPPPDSSLFWYKGNVELWQQQQQHHHHHHHHHHQEQALFQTQTPSRSTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHQHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGFEIGNFPPELNSPAVFRCVRVTSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQMQPLNFIAAAADATTASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5081554 5083601 + Lsi01G006310.1 Lsi01g00631 653289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00631 335 Pfam Domain of unknown function (DUF702) 111 262 - -
Lsi01g00631 335 MobiDBLite consensus disorder prediction 1 36 - -
Lsi01g00631 335 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 214 261 IPR006511 -
Lsi01g00631 335 MobiDBLite consensus disorder prediction 170 191 - -
Lsi01g00631 335 PANTHER PROTEIN SHORT INTERNODES 1 333 - -
Lsi01g00631 335 MobiDBLite consensus disorder prediction 170 185 - -
Lsi01g00631 335 MobiDBLite consensus disorder prediction 51 97 - -
Lsi01g00631 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 333 IPR007818 GO:0003700|GO:0006355
Lsi01g00631 335 MobiDBLite consensus disorder prediction 68 97 - -
Lsi01g00631 335 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 113 155 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00631 Lsi07g00230 CCT
Lsi01g00631 Lsi07g00230 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00631 Lsi-Chr1:5081554 Lsi06g00576 Lsi-Chr6:7568095 1.50E-37 dispersed
Lsi01g00631 Lsi-Chr1:5081554 Lsi04g01713 Lsi-Chr4:24486446 8.52E-66 wgd
Lsi01g00631 Lsi-Chr1:5081554 Lsi07g00230 Lsi-Chr7:2538914 2.44E-68 wgd
Lsi01g00631 Lsi-Chr1:5081554 Lsi08g01351 Lsi-Chr8:21804740 5.51E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24597 PF05142 DUF702 1.60E-66 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00631 - - csv:101207689 504.597