Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00632 ATGAGGAAGCGAGATTTAGCCATTCTGATGCTCTCAGCCTTCGCTATTTTTTTCTCCCTTCAGCACGAGGGCGATTTCTCGTTTAGGGAGGCGTGGATGCATTTAACTGATGAGTACCCAATCAAGTATGAGGGAGATCGTCTCCCTCCACCTGTCATCGCTGATCTTAATGGTGATGGAAAGAAGGAGGTTCTTGTAGCAACGCACGATGCTAAAATTTTGGTAATCTGGAGTCCCGTGCCACATTCGATTTGTTTTATCCAATCCCGCGTGTTTTCTTATGGAATAATTGGGTCGATTATTTTGGCCTGCTGCAATGTTAAATGTGTTCCTTTCGTTCTCCAACCGGCTATGTTGATTGGATTTATGAACTTTGAGCGGTCGTCTCAGGTTTTGGAACCCCACAGTAGGCGAGTGGATGAGGGATTTAGTCACGCACGTGTGCTGACAGAGGTCTCTTTGTTGCCTGCTAAAGTACGCATTTCATCTGGTAGACGTCCTGTGGCCATGGCTACTGGAGTTATTGATCGGCATCCCAGACAGGGGCAACCAGTGACTCAAGTTCTTGTTGTTGTTACATCCGGTTGGTCTGTGATGTGTTTTGACCACAATCTCAATAAGTTATGGGAAACAAACCTGCAGGAGGATTTTCCACATAATGCTCACCACAGAGAGATAGCTATCTCTATAAGCAATTATACCCTAAAGCATGGTGATTCCGGATTGGTTATTGTGGGTGGGAGAATGGAAATGCAGCCACACATTTTTATGGATCCGTTTGAAGAAATTGGAATTGCAGAAAAGAACGCTGAGCAGCATAGAAGAAGTGCTACTGAAAAGGAGACTTCTGAGAACTCAGGGACAGTAGATTTACGGCATTTTGCATTTTATGCATTTGCTGGTCGATCTGGTGTGCTGCGATGGAGCAGAAAGAATGAGAACATTGAGGCACATTCTTCAGATGCTTCTCAGTTAATTCCACAACATAATTACAAGCTTGATGTTCATTCTCTGAATGCTCGACATCCTGGGGAGTTTGAGTGCAGGGAATTTAGAGAGTCAATCCTTGGAGTTATGCCACACCACTGGGATAGGAGAGAAGACACTGTATTAGAGTTGGCGCACTTCAGGCGACATAAAAGGAAAGCACTGAAGAAAACAGCTGGAAAATCAATTAGTTATCCTTTTCATAAGCCTGAGGAAAACCATCCTCCAGGGAAGGACTCAAGTAAAAGGATTCCCAAAATTATTGGTACTGCTGCAAACATTGCTGGTTCGGCAAAAACTAAGAAGCCTCTTCCTTATGTTCCAACCATAACTAACTATACCAAACTTTGGTGGCTTCCTAATGTTGTTGTGGCTCATCAAAAAGAAGGGATAGAAGCTCTGCATTTAGCATCTGGCCGCACTATTTGCAAGCTACATCTTCAAGAAGGTGGTCTTCATGCTGATATTAATGGAGATGGAGTCCTTGATCATGTTCAGGTGCACATGATTTTTTTTTACATATTAATTTTTACACGTCCCAATGCTTCTAGTATTCCTGATTTCATGGGGGAAATGGATATACTTTTGTATTGTGCATGGCTTTCCTTGATAAGTGAACAAACAGACATGCCTGCTTCAGCTGATTCAATTTTCTTTTCGGATATTGAGTATATGTCTAACCTGCTTTCTCATTCTTACTTCTTTCAATTGCATCAGCTTCAGATCATCCATTTAGTTGACATTCCATTTTTCAAGTCCTTGGTCAGCAACAAAGAAATTGGATCTATATATTCTTTCCAGCATTTGAATACCACCGATGAAGTTGTGTGGCATTTAATGTGTGGAGTTCATGCTGTTGGAGGAAATGGTGCTGAGCGCACTGTGGTTAGTGGATCAATGGAAGTTATTCAACCTTGTTGGGCTGTTGCAACCTCTGGCGTACCTGTACGAGAACAGCTCTTTAATGCTTCCATATGCCACTATTCCCCTTTCAACTTCTTTCAACACGGAGAACTTTCAAGATTTGGCCGTACTCCAGACATGGCATCTTTGGAGGTTGCAACTCCCATTCTTATCCCAAGAAAAGATGGTCACAGGCATCGCAAGGGAAGCCATGGGGATGTTGTTTTCTTGACTAATCGGGGAGAGGGCTTAAATCGTGTGCCTTGCTTCTTCATGACCTGTTCATCCCATAGGTCAACAAGAGACTGCACGGATGTAAACCTCCATAACAAGTTTCAAACATGCCATCTCTTAACTGCAACTTTTTCGCAATCAATAAATCGAACAGACCTCATTCCTTTTCATGTTTATATGAATCTGCGAGTAACATCGTATTCACCTGGATTGCATGGTCATGGTGCTGATTGGCAGTGGCAGATCTCAACAGGTGCTACTTGGTCAAATCTTCCATCTCCATCGGGAATGATGGATGCTGGTACCGTGATTCCCACACTCAAGGCTATCTCCTTACGAGTGGGCGACGGTCGAGAAATGGTCCTTGCTGCAGGAGAACAAGAAGCCATAGTCATATCTCCAGGTGGAAGTGTACAAGCATCAATTGATCTTCCCGCCTCACCGACTCATGCCCTCATCTCGGAGGACTTCTCAAACGACGGTCTTACAGATATCATCCTTGTGACCTCTACCGGTGTGTATGGCTTTGTCCAGACCAGGCAACCAGGGGCCCTCTTTTTCAGCACGCTGGTTGGTTGCCTCATACTTGTAATGGGAGTCATATTTGTTACCCAACACTTGAATTCTATAAAGGGAAAACCACGGCCTTCAGCCAGTCGGTAA 2787 43.88 MRKRDLAILMLSAFAIFFSLQHEGDFSFREAWMHLTDEYPIKYEGDRLPPPVIADLNGDGKKEVLVATHDAKILVIWSPVPHSICFIQSRVFSYGIIGSIILACCNVKCVPFVLQPAMLIGFMNFERSSQVLEPHSRRVDEGFSHARVLTEVSLLPAKVRISSGRRPVAMATGVIDRHPRQGQPVTQVLVVVTSGWSVMCFDHNLNKLWETNLQEDFPHNAHHREIAISISNYTLKHGDSGLVIVGGRMEMQPHIFMDPFEEIGIAEKNAEQHRRSATEKETSENSGTVDLRHFAFYAFAGRSGVLRWSRKNENIEAHSSDASQLIPQHNYKLDVHSLNARHPGEFECREFRESILGVMPHHWDRREDTVLELAHFRRHKRKALKKTAGKSISYPFHKPEENHPPGKDSSKRIPKIIGTAANIAGSAKTKKPLPYVPTITNYTKLWWLPNVVVAHQKEGIEALHLASGRTICKLHLQEGGLHADINGDGVLDHVQVHMIFFYILIFTRPNASSIPDFMGEMDILLYCAWLSLISEQTDMPASADSIFFSDIEYMSNLLSHSYFFQLHQLQIIHLVDIPFFKSLVSNKEIGSIYSFQHLNTTDEVVWHLMCGVHAVGGNGAERTVVSGSMEVIQPCWAVATSGVPVREQLFNASICHYSPFNFFQHGELSRFGRTPDMASLEVATPILIPRKDGHRHRKGSHGDVVFLTNRGEGLNRVPCFFMTCSSHRSTRDCTDVNLHNKFQTCHLLTATFSQSINRTDLIPFHVYMNLRVTSYSPGLHGHGADWQWQISTGATWSNLPSPSGMMDAGTVIPTLKAISLRVGDGREMVLAAGEQEAIVISPGGSVQASIDLPASPTHALISEDFSNDGLTDIILVTSTGVYGFVQTRQPGALFFSTLVGCLILVMGVIFVTQHLNSIKGKPRPSASR 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5092993 5099094 - Lsi01G006320.1 Lsi01g00632 653290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00632 928 PANTHER FG-GAP REPEAT-CONTAINING PROTEIN 771 926 - -
Lsi01g00632 928 PANTHER FG-GAP REPEAT-CONTAINING PROTEIN 129 497 - -
Lsi01g00632 928 PANTHER FG-GAP REPEAT-CONTAINING PROTEIN 1 77 - -
Lsi01g00632 928 PANTHER FG-GAP REPEAT-CONTAINING PROTEIN 612 712 - -
Lsi01g00632 928 MobiDBLite consensus disorder prediction 396 410 - -
Lsi01g00632 928 MobiDBLite consensus disorder prediction 393 412 - -
Lsi01g00632 928 SUPERFAMILY Integrin alpha N-terminal domain 21 497 IPR028994 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00632 - - - csv:101223217 733.791
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1062 . . Bda04g00034 . . . Bma09g00095 . . . Cma03g00709 Cma07g00454 Car03g00650 Car07g00400 Sed14g1168 Cpe19g00836 Cpe10g00645 Bhi03g00900 Tan03g2041 Cmetu04g1736 . Hepe04g1563 . . Cla01g01951 Cam01g2040 Cec04g1698 Cco04g1763 Clacu01g2062 Cmu01g1939 Cre04g1613 . . . Cone9ag1582 Lsi01g00632 . . Cme08g00898 Blo05g00814 . . . . Bpe06g00033 . . . Cmo03g00735 Cmo07g00451 . . . . . . . . . . . . . . . . . . . . . Csa06g03293 Chy02g00603 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011298 1 1 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00632 Lsi_Chr01 FPKM 1.829787 1.024734 6.607242 5.427514 12.522104 13.909957 14.488278 27.027475 26.050133 26.671921