Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00634 ATGGCAGCAGCAGCAGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTTATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTACCTGGTGTCACATTTCTCAAGGTTGATGTGGATGATCTAGAGTCGGTAGCAAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTTCTGAAAGAGGGAAGAATTGTGGATAAGGTGGTTGGAGCAAAGAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCTACTGCTTCTGCCTGA 372 47.04 MAAAAAAAEGRVIRCTTIDLWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKLPGVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5114537 5115623 + Lsi01G006340.1 Lsi01g00634 653292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00634 123 PANTHER THIOREDOXIN 7 121 - -
Lsi01g00634 123 SUPERFAMILY Thioredoxin-like 10 118 IPR036249 -
Lsi01g00634 123 Pfam Thioredoxin 16 113 IPR013766 -
Lsi01g00634 123 PRINTS Thioredoxin family signature 43 52 - -
Lsi01g00634 123 PRINTS Thioredoxin family signature 82 93 - -
Lsi01g00634 123 PRINTS Thioredoxin family signature 35 43 - -
Lsi01g00634 123 ProSitePatterns Thioredoxin family active site. 36 54 IPR017937 -
Lsi01g00634 123 ProSiteProfiles Thioredoxin domain profile. 1 119 IPR013766 -
Lsi01g00634 123 Gene3D Glutaredoxin 2 122 - -
Lsi01g00634 123 PANTHER THIOREDOXIN H-TYPE-LIKE ISOFORM X1 7 121 - -
Lsi01g00634 123 CDD TRX_family 30 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00634 K03671 trxA; thioredoxin 1 - csv:101203181 202.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00634 Lsi-Chr1:5114537 Lsi04g00930 Lsi-Chr4:9612602 1.71E-38 dispersed
Lsi01g01034 Lsi-Chr1:8540924 Lsi01g00634 Lsi-Chr1:5114537 5.44E-06 transposed
Lsi03g00498 Lsi-Chr3:5736104 Lsi01g00634 Lsi-Chr1:5114537 1.49E-13 transposed
Lsi05g00715 Lsi-Chr5:9693130 Lsi01g00634 Lsi-Chr1:5114537 6.52E-16 transposed
Lsi08g00514 Lsi-Chr8:13066182 Lsi01g00634 Lsi-Chr1:5114537 3.68E-17 transposed
Lsi06g00659 Lsi-Chr6:10008043 Lsi01g00634 Lsi-Chr1:5114537 4.92E-17 transposed
Lsi01g00634 Lsi-Chr1:5114537 Lsi04g01706 Lsi-Chr4:24424625 2.61E-43 wgd
Lsi01g00634 Lsi-Chr1:5114537 Lsi08g01360 Lsi-Chr8:21915012 1.08E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00634 Lsi_Chr01 FPKM 2.04484 2.547355 0.380753 0.248371 1.696432 2.478249 2.076913 0.956798 1.03173 0.702335