Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00637 ATGCTTCGTTCCCACAAAAATCTATGCAGGTTCATCTACGGCCTGAACCACCATCAATCCCTTCACTGTATACATTCAGCTTCCACTTATCAACACAACCACAGAAACCATGGCGCAAACGAAAATGTTCGAAAGAAAGATGAGAACGAAGAACCCCATTTGTATTTCTACAAGAGTAGAGGCCAACACATTCTTACGAACCAGCGAATTCTGGACTCTATTGTTAAAAAATCTGCCATACTTCCGACCGATACGGTCTTGGAGATCGGACCCGGCACCGGAAATCTGACATTGAAGCTTCTGGAAGCTTCTCAAAAGGTCATAGCCGTTGAAATCGATAAAAGAATGGTCGAGGTTCTTCACAGACGCGTGGCGGAGCACAACTTTGAAGACCGCATTTATGTCATATGCCAAGATGCTTTGAAATGTGAGTTCCCTCGTTTTGACCTCGTTGTGGCCAATATCCCTTATGGGATATCTTCGCCGCTTGTGGCCAAGTTGGTATACGGGACAATTCCATTCCGGAGTGCCACGCTTCTACTTCAGAAGGAGTTTGCGCGACGGTTGTTAGCGGATCCTGGTGATTCTGAGTACAATCGTCTGGCTGTAAATGTGAAACTGCTGGCTGATGTGGAGCATGTCATGGATGTAAGCAAGAGGGAGTTTGTTCCTTGTCCTAAAGTCGACTCATCCGTTGTGATCATCCGCCCCAAGAAGGAAGTTCCACAAGTGAATCTGGAAGAGTGGCGAGCGTTCACTAGAACTTGCTTTGGCAAGAAGAATAAGACACTTGGGGCAACTTTCAAGCAGAAGAGGAAGCTGATGGACCTTATGCACTCAAATTCAGAGGAGGGGTTTAATTCCTTCAAGGAGATGGTCATACAGGTTCTAAAATCTGGGAACTTTGAAGATAAGAGGCCTGCAAAGTTGTGTAATGAGGAGTTGCTACATTTGCTAGCGTTGTTTAATCAAGCTGGAATATATTTTCACGATGGATCAAAGCTTCAAGATGTAGAAAGAAGAGTCTTAGATGATGCCTACAGTTCAGAACTAGAAGAGTAA 1062 44.73 MLRSHKNLCRFIYGLNHHQSLHCIHSASTYQHNHRNHGANENVRKKDENEEPHLYFYKSRGQHILTNQRILDSIVKKSAILPTDTVLEIGPGTGNLTLKLLEASQKVIAVEIDKRMVEVLHRRVAEHNFEDRIYVICQDALKCEFPRFDLVVANIPYGISSPLVAKLVYGTIPFRSATLLLQKEFARRLLADPGDSEYNRLAVNVKLLADVEHVMDVSKREFVPCPKVDSSVVIIRPKKEVPQVNLEEWRAFTRTCFGKKNKTLGATFKQKRKLMDLMHSNSEEGFNSFKEMVIQVLKSGNFEDKRPAKLCNEELLHLLALFNQAGIYFHDGSKLQDVERRVLDDAYSSELEE 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5135130 5136758 + Lsi01G006370.1 Lsi01g00637 653295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00637 353 Pfam Ribosomal RNA adenine dimethylase 58 271 IPR001737 -
Lsi01g00637 353 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, MITOCHONDRIAL 286 330 - -
Lsi01g00637 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 55 324 IPR029063 -
Lsi01g00637 353 CDD AdoMet_MTases 85 168 - -
Lsi01g00637 353 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 56 326 IPR001737 -
Lsi01g00637 353 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 86 113 IPR020596 GO:0000154|GO:0000179|GO:0008649
Lsi01g00637 353 PANTHER DIMETHYLADENOSINE TRANSFERASE 286 330 IPR001737 -
Lsi01g00637 353 SMART rADcneu6 70 239 IPR020598 GO:0000154|GO:0000179|GO:0008649
Lsi01g00637 353 Gene3D Vaccinia Virus protein VP39 56 241 IPR029063 -
Lsi01g00637 353 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, MITOCHONDRIAL 27 284 - -
Lsi01g00637 353 Gene3D - 243 331 - -
Lsi01g00637 353 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 57 320 IPR011530 GO:0000179|GO:0006364
Lsi01g00637 353 PANTHER DIMETHYLADENOSINE TRANSFERASE 27 284 IPR001737 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00637 K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] - csv:101203673 634.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00637 Lsi-Chr1:5135130 Lsi04g02364 Lsi-Chr4:30802420 6.28E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1056 . . Bda04g00036 . . . Bma09g00094 . . . . Cma07g00458 . Car07g00404 Sed06g1238 Cpe19g00832 . Bhi03g00905 Tan03g2037 Cmetu02g1762 . Hepe04g1559 . . Cla01g01947 Cam01g2035 Cec04g1693 Cco04g1758 Clacu01g2057 Cmu01g1934 Cre04g1608 . . Cone6ag1654 . Lsi01g00637 . . Cme08g00893 Blo05g00813 . . . . Bpe06g00036 . . . . Cmo07g00455 . . . . . . . . . . . . . . . . . . . . . Csa06g03289 Chy02g00607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011898 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00637 Lsi_Chr01 FPKM 12.133631 13.616194 12.323926 10.942872 14.202826 18.856186 15.12956 7.548312 7.615885 9.327146