Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00638 ATGGAATGGGTTATGGGATTTTGGGTTTGGTTTGTGAGTGTTGTTATTTTAGGTTGGTTTTGGTTGAAGAAGAAGAAGAAGCATATTGGAAACAAAGATGGAATTCCTAAAGGGAATTTGGGTTGGCCTCTCTTTGGTGAAACTCTTCATTTCATTTCTTCTGGCTATTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTAGCGAAGTTGTTGAAAATTGTGAGTAAGATTGTGGAAGATAGAAAATCGAGGGTGGAGGAGAAGGTTGCACCGAGAGATGCGGTGGACGTGCTGTTACAGGATCACGATGAGATCCAAGGGCTACCGTTGGATTTCATCAGCAGTCATATCATAGAGCTGATGATTCCCGGCGAGGAGACGGTGCCGATGGCCATGACCCTAGCCGTCAAATTTCTCAGTGATTGCCCCTGCGCTCTTGCCCAATTAATGGAAGAAAAAAAGTATAAGTGGAGGGAGACGCACGAGCGGGGGAGCGCACGTGTGAGTGAGAGAGACAGAGAAAATGAGGAAGAGAATATGAAATTAAAGAAGCAGAAGGATGGTTCTGGAGAGGAGTATACGTGGACAGATTACATGTCTCTGCTATTTACTCAAAATGTGATTAGTGAAACATTAAGAATGGCTAATATCATCAATGGGGTTTGGAGAAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGCGTCTTGGCATCTTTTATTTCGGTTCATATGGATGAAAAGAACTATGCCAACCCGCATCAGTTTGATCCATGGAGATGGGAGGAAAATTTGTCTGCAACAAACAACCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCTGGCATCGAACTCGCCAGGCTCGAAATCTCAATTTTCCTTCATCATCTCGTCACTACCTACAAATGGGGAGCTGAAAAGGATGAAATCATCCATTTTCCGACAGTGAGGATGAGAAGGAAGCTGCCAATCACAATCACAACCTTAAGCTCTTGA 1032 43.6 MEWVMGFWVWFVSVVILGWFWLKKKKKHIGNKDGIPKGNLGWPLFGETLHFISSGYSSRPVTFMDKRKSLAKLLKIVSKIVEDRKSRVEEKVAPRDAVDVLLQDHDEIQGLPLDFISSHIIELMIPGEETVPMAMTLAVKFLSDCPCALAQLMEEKKYKWRETHERGSARVSERDRENEEENMKLKKQKDGSGEEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDEKNYANPHQFDPWRWEENLSATNNHNFTPFGGGQRLCPGIELARLEISIFLHHLVTTYKWGAEKDEIIHFPTVRMRRKLPITITTLSS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5136644 5143389 - Lsi01G006380.1 Lsi01g00638 653296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00638 343 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90C1 10 69 - -
Lsi01g00638 343 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90C1 72 157 - -
Lsi01g00638 343 Gene3D Cytochrome P450 36 341 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 Pfam Cytochrome P450 69 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 SUPERFAMILY Cytochrome P450 60 338 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS P450 superfamily signature 292 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS P450 superfamily signature 283 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS P450 superfamily signature 209 220 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS P450 superfamily signature 126 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 MobiDBLite consensus disorder prediction 163 189 - -
Lsi01g00638 343 PANTHER 3-EPI-6-DEOXOCATHASTERONE 23-MONOOXYGENASE CYP90C1 180 338 - -
Lsi01g00638 343 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 285 294 IPR017972 GO:0005506|GO:0016705
Lsi01g00638 343 PANTHER CYTOCHROME P450 26 180 338 - -
Lsi01g00638 343 PRINTS B-class P450 signature 209 220 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS B-class P450 signature 254 269 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS B-class P450 signature 226 253 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS B-class P450 signature 283 292 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 PRINTS B-class P450 signature 292 303 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00638 343 Coils Coil 169 189 - -
Lsi01g00638 343 PANTHER CYTOCHROME P450 26 10 69 - -
Lsi01g00638 343 PANTHER CYTOCHROME P450 26 72 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00638 K12637 CYP90C1, ROT3; 3-epi-6-deoxocathasterone 23-monooxygenase [EC:1.14.14.147] - csv:101203911 447.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00638 Lsi07g01143 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00638 Lsi-Chr1:5136644 Lsi02g02944 Lsi-Chr2:35584038 6.81E-09 dispersed
Lsi01g00638 Lsi-Chr1:5136644 Lsi07g00564 Lsi-Chr7:5994952 8.12E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1053 . . Bda04g00037 . . . Bma09g00093 . . . . Cma07g00460 . Car07g00406 Sed14g1163 Cpe19g00830 . Bhi03g00906 Tan03g2035 Cmetu04g1284 . Hepe04g1557 . . Cla01g01946 Cam01g2034 . Cco04g1757 Clacu01g2056 Cmu01g1933 Cre04g1607 . . Cone6ag1653 Cone9ag1578 Lsi01g00638 . Chy07g01292 Cme08g00892 Blo05g00812 . . . . Bpe06g00037 . . . . Cmo07g00457 . . . . . . . . . . . . . . . . . . . . Lsi07g01143 Csa06g03288 Chy02g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001047 2 3 2 2 2 2 3 2 2 3 3 3 3 3 3 3 3 2 3 2 3 3 3 3 3 3 3 4 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00638 Lsi_Chr01 FPKM 12.673591 12.406715 12.144193 12.796159 17.878904 21.677248 18.227133 12.192518 16.197168 16.601925