Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00639 GTTCAAAATAACTTAAAACACCATCCAATGAAGAAGAGAGTTCTCGACAATGAGTCTTTTGTATTCAAATGCAGTGGAAGAACAAATCACCAGCTTCAATTTTCCACTCCTAATGCTAACTCTGTAAACTCAAACAGTGATACAAGCATTGATCTTCTCAATGGTCTCTCAAGGGAAGTACCTATCGGCAAGCGCCGAGTAAACTTTCCCGCCGAGACGCCGCCGAAATCTTATTCCTTCAACTCATCTATGTCAGGCTATACTCTCCATGTCGATGAACTAAAAAGAAACGAAGACAAATCGCAGCCGGATATGTGGCAGTGGGAGAATGCCACCGCCGGTGCCCTCGCCGGATTTGCCACCGTCGCTGCCATGCATCCTCTGGATGTCGTTCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCGAATCTCCCGACTTACAAGAATACGGTTAATGCAATCTTCACTATTACTCGGATGGAGGGCTTGAGAGGGCTATATGCAGGCTTCTATCCTGCAGTTCTCGGGTCAACTGTTTCTTGGGGTTTATATTTCTTTTTCTATGGTAGAGCCAAACAAAGATATTCTGACAATGGAAAGAAGGACTTGAGTCCTAGTCTTCATCTTGCTTCTGCAGCGGAAGCAGGAGCATTGGTTTGTTTTTGCACAAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTGGCCTTATGCTTGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAATTTATTGCCAACTCAAGGTCTAAAGGGACCAGAGTGGATGCTCATAGTTCTGGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGAAATGATGGGATCCCAAGATACATGGATAGCTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGGATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCTGCGGCTTCAATCACATTTATTGTGTACGAAAACGTCTTAAACTTGCTCAAACCAACAAGACAAAAGGAATAA 1230 43.58 VQNNLKHHPMKKRVLDNESFVFKCSGRTNHQLQFSTPNANSVNSNSDTSIDLLNGLSREVPIGKRRVNFPAETPPKSYSFNSSMSGYTLHVDELKRNEDKSQPDMWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIFTITRMEGLRGLYAGFYPAVLGSTVSWGLYFFFYGRAKQRYSDNGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPGLMLVSHGAIQFTVYEELRKFIANSRSKGTRVDAHSSGELLNSGDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKPTRQKE 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5147862 5161508 - Lsi01G006390.1 Lsi01g00639 653297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00639 409 PANTHER BNAA09G07970D PROTEIN 106 404 - -
Lsi01g00639 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 195 IPR018108 -
Lsi01g00639 409 SUPERFAMILY Mitochondrial carrier 107 397 IPR023395 -
Lsi01g00639 409 Gene3D Mitochondrial carrier domain 146 409 IPR023395 -
Lsi01g00639 409 Pfam Mitochondrial carrier protein 105 198 IPR018108 -
Lsi01g00639 409 Pfam Mitochondrial carrier protein 317 403 IPR018108 -
Lsi01g00639 409 Pfam Mitochondrial carrier protein 203 295 IPR018108 -
Lsi01g00639 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 315 401 IPR018108 -
Lsi01g00639 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 292 IPR018108 -
Lsi01g00639 409 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 106 404 IPR044712 GO:0006862|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00639 K15115 SLC25A32, MFT; solute carrier family 25 (mitochondrial folate transporter), member 32 - csv:101204160 582.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00639 Lsi-Chr1:5147862 Lsi02g02438 Lsi-Chr2:30946157 2.00E-11 dispersed
Lsi11g00534 Lsi-Chr11:5615190 Lsi01g00639 Lsi-Chr1:5147862 1.28E-17 dispersed
Lsi01g00639 Lsi-Chr1:5147862 Lsi08g01194 Lsi-Chr8:20513216 3.99E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1048 . . . . . . . Bma15g00985 . . Cma03g00714 . . . . Cpe19g00828 Cpe10g00641 Bhi03g00909 . . . . . . Cla01g01945 . Cec04g1692 . Clacu01g2055 Cmu01g1932 . . Cone12ag0781 . . Lsi01g00639 . . Cme08g00891 . Blo06g00145 . . Bpe10g00131 . . . . Cmo03g00741 . . . . . . . . . . . . . . . . . . . . . . Csa06g03287 Chy02g00609 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010733 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00639 Lsi_Chr01 FPKM 1.844242 2.579062 1.852632 2.394894 1.862063 1.573712 2.199111 1.996077 1.547576 2.123648