Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00641 ATGGCCAAGCTTATGAGCTTTGTTTTTGTTCTTTCCCTTCTTGCCTTTGCTCCACTCTGTTTCTGTGGCAGAAATAATGGTGGCTTTGGGTCTCTGTACCCCCAATATTATGACCATTCATGCCCCAATGCTAAGGAAATAGTAAAATCCATTATGGCAAAGGCTTTTGCCAGAGAAGCTCGTATTGCTGCTTCTATCCTTAGACTTCACTTCCATGACTGTTTTGTTCAGGGGTGTGATGCATCTTTGCTACTGGATAGCACTGGAAGCATTAGGAGCGAAAAGAATTCAAATCCAAATAGGAATTCGGCTAGAGGATTTGAAGTGATTGATGAAATCAAATCTGCATTGGAGAAAGAGTGCCCACAAACTGTTTCTTGTGCTGATATATTGGCTTTGGCTGCAAGAGATTCCACTGTCATTACGGGTGGACCATATTGGGAGGTTCCATTGGGGAGGAAGGACTCAAGAACTGCGAGTCTGAGTGGCTCCAACAACAACATTCCAGCTCCAAACAATACTTTCCAAACCATTCTCAATAGATTCCAAAACCAAGGGCTTGACATCGTTGATCTTGTTGCCTTATCTGGAGGCCACACCATCGGAAATTCAAGGTGCACCAGCTTCAGGCAGAGGCTATATAACCAGAACGGCAACGGACAACCCGACAAAACCCTTCCGCAGTCGTACGCGGCGGAGCTCCGGAACCGCTGCCCGAGATCCGGCGGCGACAATAACCTCTTTTTCCTCGACTACGTCAGTCCCACCAAATTCGACAACAGCTACTTCAAAAATTTAGTTGGTTTCAAAGGGCTCCTCAACTCCGACCAAGTTCTCCTCACCGAAAACGACGCGTCGGCCGCTTTGGTAAAGAAATACGCCGACAACAGCGAACTGTTCTTCGAGCAATTCGCAAAATCAATGATCAAAATGGGTAATATTTCCCCATTGACGGGCTCAAGTGGAGAGATCAGAAAGACTTGCAGGAAGATCAACAGTTAA 1002 46.11 MAKLMSFVFVLSLLAFAPLCFCGRNNGGFGSLYPQYYDHSCPNAKEIVKSIMAKAFAREARIAASILRLHFHDCFVQGCDASLLLDSTGSIRSEKNSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVITGGPYWEVPLGRKDSRTASLSGSNNNIPAPNNTFQTILNRFQNQGLDIVDLVALSGGHTIGNSRCTSFRQRLYNQNGNGQPDKTLPQSYAAELRNRCPRSGGDNNLFFLDYVSPTKFDNSYFKNLVGFKGLLNSDQVLLTENDASAALVKKYADNSELFFEQFAKSMIKMGNISPLTGSSGEIRKTCRKINS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5166953 5169436 - Lsi01G006410.1 Lsi01g00641 653299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00641 333 ProSiteProfiles Plant heme peroxidase family profile. 31 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 SUPERFAMILY Heme-dependent peroxidases 32 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 CDD secretory_peroxidase 32 331 IPR033905 GO:0004601|GO:0042744
Lsi01g00641 333 PANTHER PEROXIDASE 5 332 - -
Lsi01g00641 333 PANTHER PEROXIDASE 72-RELATED 5 332 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Lsi01g00641 333 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 249 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 265 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 Gene3D Peroxidase, domain 2 169 312 - -
Lsi01g00641 333 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 PRINTS Haem peroxidase superfamily signature 251 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 Pfam Peroxidase 48 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00641 333 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Lsi01g00641 333 Gene3D - 36 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00641 Lsi-Chr1:5166953 Lsi10g01475 Lsi-Chr10:18880440 2.51E-105 dispersed
Lsi01g01358 Lsi-Chr1:11762761 Lsi01g00641 Lsi-Chr1:5166953 9.17E-62 dispersed
Lsi10g00311 Lsi-Chr10:4965744 Lsi01g00641 Lsi-Chr1:5166953 4.19E-96 dispersed
Lsi04g00321 Lsi-Chr4:3287127 Lsi01g00641 Lsi-Chr1:5166953 1.38E-23 transposed
Lsi04g00322 Lsi-Chr4:3288635 Lsi01g00641 Lsi-Chr1:5166953 1.07E-09 transposed
Lsi05g00055 Lsi-Chr5:1137953 Lsi01g00641 Lsi-Chr1:5166953 6.91E-67 transposed
Lsi07g00158 Lsi-Chr7:1675398 Lsi01g00641 Lsi-Chr1:5166953 9.54E-44 transposed
Lsi09g00501 Lsi-Chr9:5237688 Lsi01g00641 Lsi-Chr1:5166953 8.81E-96 transposed
Lsi09g01505 Lsi-Chr9:23101471 Lsi01g00641 Lsi-Chr1:5166953 1.10E-103 transposed
Lsi09g01839 Lsi-Chr9:27215644 Lsi01g00641 Lsi-Chr1:5166953 1.05E-61 transposed
Lsi11g01574 Lsi-Chr11:24075599 Lsi01g00641 Lsi-Chr1:5166953 5.28E-105 transposed
Lsi01g00641 Lsi-Chr1:5166953 Lsi07g00236 Lsi-Chr7:2618600 8.18E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00641 K00430 - csv:101204648 615.15