Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00642 ATGAGTGCAAGATATCATATTGGTGTTTGTTCTTTACATTTACTACTCTTCACTGCATTCATTAGTGTCCTTTTACTGGCTGTTGAAATGAATGCAATTGCAGTGCCAAATTCCAGTTGCTATGTTTTTGACAATTCTAGTCACATTATTGACTTTGTATCCTACATAGTATGTTGTGAGCCCATGACTATGGGATATGTAGATTTTGGTCGATTTGACAAATTCAATTACTTTGTCTCTGGTTCAGGACATGCCAACTTTGTTCAAGGTTATTACTATGGTGACCTGACTTCTTGTGAGCAGAGTTATGACAAATTGGGGAGAACTGCGCTGGTAAATGTTATATGTGGAAGTTGTTTAAATGGACAATGTAAAGGTGGTCTGGGATGCATCTGCAATATCACTTATGAGTCCAGTTGCAGCAATTCATGTTACACCCTCATGCAGGAAAATACAGTTATTGTCGATCTTGCCATCCCTTGTGCGATACAAGGCCCACAAATTTTCAAAGGATTTACTGTTGGTTTTCACCCCCGATCCTGGGAAATTGTTTACAATGGCTTGACTCAATTAGGCTATGAGAAGCCACACCATGCATTCAGTTTCAGCACAGAGCAGACTGGTGTTGTTCTTTATATGACTGCCATTGCATCCCTTTCCTCTTTGGTACAGAACCCAATCATTCAGGTTTTTCCAGAAAATGGACTAGATGTGAAAGTATCAGGCTCAGGGGCAACTGGGAGCTACCCTACAACTCTGTCACCCTCAATGTTGATGATTGACTGGAGATGTGATATTGCTAGAGACATTCCATATGAAGTTAACGTCACAATCCCTGTGGCTGATTATGAACCAATTAGTTTTTTCCTTACCAAAATGTGTGGCCCGAGTGCAAGGCCAGGTAAGCTATTTTTCAATGCCATTGCGCATGGAATTGATGCATTGCCGGGCATGACACTACTTTCCGCCTGCTTGGAAACTGTGAGTGGTGCAGGACAGAGCTACCCGAGAGCTGAAGGCATCAATAGTGGATTCGTCAGTGAAGCCTCCTGGGATCGCCCACCATCCTCTTCCTCTTCTCGACGGACTTGGACACCAACTGAGAAAAATTATGGTTCAATATGA 1125 42.4 MSARYHIGVCSLHLLLFTAFISVLLLAVEMNAIAVPNSSCYVFDNSSHIIDFVSYIVCCEPMTMGYVDFGRFDKFNYFVSGSGHANFVQGYYYGDLTSCEQSYDKLGRTALVNVICGSCLNGQCKGGLGCICNITYESSCSNSCYTLMQENTVIVDLAIPCAIQGPQIFKGFTVGFHPRSWEIVYNGLTQLGYEKPHHAFSFSTEQTGVVLYMTAIASLSSLVQNPIIQVFPENGLDVKVSGSGATGSYPTTLSPSMLMIDWRCDIARDIPYEVNVTIPVADYEPISFFLTKMCGPSARPGKLFFNAIAHGIDALPGMTLLSACLETVSGAGQSYPRAEGINSGFVSEASWDRPPSSSSSRRTWTPTEKNYGSI 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5170810 5180886 - Lsi01G006420.1 Lsi01g00642 653300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00642 374 MobiDBLite consensus disorder prediction 346 374 - -
Lsi01g00642 374 MobiDBLite consensus disorder prediction 349 374 - -
Lsi01g00642 374 PANTHER G-PROTEIN COUPLED RECEPTOR 10 55 - -
Lsi01g00642 374 PANTHER G-PROTEIN COUPLED RECEPTOR 309 374 - -
Lsi01g00642 374 PANTHER G-PROTEIN COUPLED RECEPTOR 64 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00642 - - - csv:101207936 581.637
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1044 . . . . . . Bma09g00091 . . . Cma03g00717 Cma07g00464 Car03g00657 Car07g00411 . Cpe19g00826 Cpe10g00639 Bhi03g00913 . . . . . . . . . . . . . . . . Cone9ag1574 Lsi01g00642 . . Cme08g00889 . . . . . . . . . Cmo03g00743 Cmo07g00462 . . . . . . . . . . . . . . . . . . . . . Csa06g03284 Chy02g00612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00642 Lsi_Chr01 FPKM 13.752096 14.108522 15.853664 15.732642 17.75992 16.171106 17.122263 23.148752 22.388821 22.982882