Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00643 ATGTCATCTGAACTCCATACAGTCGAAAGCCCTAGAAAATGGCGCTTCACATGGGAAGCGCAATCCCATATACCAACCCTACGTTTATTGCTCTTCGATTCCTATACCAATCCTTCTCTTCAGTGTCAGAATCTCAAGGTTCATCTCAATCTCCAGCAGTCCGTCGTATGTGTGGCTTGGTTACAAGACCTCGATATGTCGATTCGAGTTCCTATGCCTCCGGTTTTGGTTGATGCTGAGTCGCCTCTGAGTTTTAGAGCTTTCGAAGACCACATTGAGGTCAAGCTCGTCTTGCTTCTTCCGGTTGATCACCCAATTATTCTCAACTTCGACAATGTGCCGGACTCCTCCCAAGAGCGAGGAAATAGCCACTCCAAGGCGTCGAAGCCACTCTCGATGGATTCTGATCAAATCAGTTTATCCCGCAGTGGTGGCGTCCACTTTTATTGCAGAAATTGTTCTTTCAGGCTGAGCAAGTCCCCTCTCAGAGATTTTGTTGAAATGCCATCAGTCAATTGGCGAGAGGTGGCTGATAACTGGTTTGGCTCTTGCTGCTGCTCTTTCGGGGGGATAAGCGAGAAGCTGGTTACTAGGTACACAAATTCCTATAGATGTGCAAAGGGTGTCTGCCTACTCACTTTAACGACTATTACTCTTTCCAAGGATGACCTTATTGGACAAATGTTCCCGGACTATGATGGGACCCGAGAATTCAAGGATGAATCAGATTTTTCTGATGGCAATTGGTTAACTGAAGCTAAGCAGGAATCAGAGAAGGTAAAATCTAAGCAGTTCAATTATAAAAACTCTGTTGCAAACATGGAGGGTAATGCTGCTGAGAAGGGAAGTGATGAAGTTGATTCACCTATTGTGGCTCCAATTCCTGACTGCTGTCATCATGAAGAAAGTAATGTACTACATCATCTTGATAGGGATTGCATGCATCACACATGTGGCACATATAACTTAGACTCAAAGCCTAGTAATACTGTAGATATTTCGGACGATCAGAGATCATTTCTTAATGGTTTTCTTGGAAATATCTTTATGGCTAGACTGTCAAATCTTTCAGCAGATTTTGAGTGGGCTGAGTTCTTTTGCCCCCAGTGCTCAACTCTGATTGGGGCTTACCCTTGCAGAAATGGCTGTGGACCTACAGACGGTGGAGTTCGACTTTTTAAATGTTATGTCTCAACATGTCTATCAGCTGAAGCAGGAAATTTGTTAAGGGAGTACACGTTGGAAAGAATGTTTGCAAATCAGCTACTGGAAAGTGCAAATGAAGAATCATCATTTCGTACTGTGGTCAAGGAGTTGAAAACCAAGTCTCCCATGCTGCACGTTGTTCTCATCAATTCAAATTCTTGGTCGTGTAGTGGTTATTGTTTGGGCATGGAGGATACTGCAGAAGTTGTTCCAAAGGTGGACTTAAATCCAATCATCAAGGTGCTATTCTCAGATTGCAACAAAAGTGCAGAATCTCACTTGAGGAAACTTGAAGAGTGGGTGACAAAAGATATAGCAGAAGAAGTTTTTATGTTAGCCCATCAAATAGAGGAATTAGTTGGAATCCTAGTTTCAAGAAATGATACTCTTCCATCTTCATGTTCTTCCCTTGATGGTTTAACTTTGACATCTATCCTGAGGTAA 1650 42.79 MSSELHTVESPRKWRFTWEAQSHIPTLRLLLFDSYTNPSLQCQNLKVHLNLQQSVVCVAWLQDLDMSIRVPMPPVLVDAESPLSFRAFEDHIEVKLVLLLPVDHPIILNFDNVPDSSQERGNSHSKASKPLSMDSDQISLSRSGGVHFYCRNCSFRLSKSPLRDFVEMPSVNWREVADNWFGSCCCSFGGISEKLVTRYTNSYRCAKGVCLLTLTTITLSKDDLIGQMFPDYDGTREFKDESDFSDGNWLTEAKQESEKVKSKQFNYKNSVANMEGNAAEKGSDEVDSPIVAPIPDCCHHEESNVLHHLDRDCMHHTCGTYNLDSKPSNTVDISDDQRSFLNGFLGNIFMARLSNLSADFEWAEFFCPQCSTLIGAYPCRNGCGPTDGGVRLFKCYVSTCLSAEAGNLLREYTLERMFANQLLESANEESSFRTVVKELKTKSPMLHVVLINSNSWSCSGYCLGMEDTAEVVPKVDLNPIIKVLFSDCNKSAESHLRKLEEWVTKDIAEEVFMLAHQIEELVGILVSRNDTLPSSCSSLDGLTLTSILR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5181889 5185322 - Lsi01G006430.1 Lsi01g00643 653301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00643 549 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 118 537 IPR019193 -
Lsi01g00643 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER 15 544 IPR019193 -
Lsi01g00643 549 Coils Coil 409 429 - -
Lsi01g00643 549 MobiDBLite consensus disorder prediction 115 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00643 - - - csv:101204887 1019.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00643 Lsi07g00244 CCT
Lsi01g00643 Lsi07g00244 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1031 . Blo16g00057 . Bda10g00146 . Bpe13g00433 . . Cmo04g00808 Cmo16g00687 Cma03g00718 . Car03g00658 . . . Cpe10g00638 Bhi03g00917 . . . . . . Cla01g01942 Cam01g2031 Cec04g1690 Cco04g1754 Clacu01g2053 Cmu01g1929 Cre04g1604 . . Cone6ag1650 . Lsi01g00643 . Chy07g01255 Cme08g00888 . Blo06g00142 Bda11g01853 . Bpe10g00127 . Bma03g00980 . . . . Cma16g00631 . . . . Cpe14g00538 . . . . . . . Cla07g00825 Cam07g0892 Cec07g0943 Cco07g0935 Clacu07g0865 Cmu07g0868 Cre07g1229 Lsi07g00244 Csa06g03282 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00643 Lsi_Chr01 FPKM 4.054874 4.927456 2.246004 2.941884 2.358627 1.542866 1.914787 2.189603 1.890142 2.204604