Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00645 ATGGAGTCTGCTAATCTCCAACATCAACTTCAAGAATTATTTGTTGGATATTCTTCTTTGGTATCAGCTCCAAGAACAGCTCCCAATATCACTCATGAATGCAACCCCAATATCATTTTGGAAGGAAATTCCTACAATAACCCTTATTCAGTGGATCAAAGCTTACAATGTTCATCAAGGGAGAATGAGAATGTATGGTTTAATTTCTCATCAACTTACCAACAACAACAACAAGCCAATGAACAGCAACTTTCAACTCTTTATTCTTCTGTTCAATCTCCAGCAAGTTATGGAGGTTTTCAAGGGTTATCAGCTGGATCCAACACCAATTATTACACCAATAATGTTTTTTCGAGTAGTTCAAGGAATAATAATAATAGTAGTAGTAGTACTTCAACGTTGGATTTGTTATCTTCATCATCATTTTCAAGTTCCATGGGCTACAATTTACAGGCTGCTGATCATCATCATCTGGATTTTCTCTCAACCCCAAATTATTCAAGTACTGGTTTTAACAAAAATAGAGTTCTATTTGGCTATCCTCATCAACATCATCATATCCAAGATTCAATTCATAATAACAACAGCCCATCAAACAGCTCCAATAAAACTTCATCATCAAGTGTTGCAAGAGCAAAGAGGCCAGTTAACAGCATGTCTGAGCCTAAAAAGTCCAATAATCCAGAATCTAAGAAATCTTGCTCCACTTCAAGATCCTCTTGCCCACCATTAAAGGTGAGAAAAGAGAAATTGGGAGACAGGATATCAGCACTTCAAAGGCTGGTTGCACCTTTTGGTAAGACTGATACTTCCTCAGTTCTAACCGAAGCAATTGGCTACATTCAGTTTCTTCATGACCAAGTCGAGACTTTAAGCATGCCATATTTGGGGTCCTCTCAGAGCAAAACCTACCAAAAACAGCAGCCTGGTTCGATCCAGGAGGATGGAACAAAACCAAGGCAAGATCTTAGAAGCAGAGGGCTATGCCTTATGCCACTTTCCTGCGCTTCATTCATTCACGGTTTTGATTGA 1032 38.66 MESANLQHQLQELFVGYSSLVSAPRTAPNITHECNPNIILEGNSYNNPYSVDQSLQCSSRENENVWFNFSSTYQQQQQANEQQLSTLYSSVQSPASYGGFQGLSAGSNTNYYTNNVFSSSSRNNNNSSSSTSTLDLLSSSSFSSSMGYNLQAADHHHLDFLSTPNYSSTGFNKNRVLFGYPHQHHHIQDSIHNNNSPSNSSNKTSSSSVARAKRPVNSMSEPKKSNNPESKKSCSTSRSSCPPLKVRKEKLGDRISALQRLVAPFGKTDTSSVLTEAIGYIQFLHDQVETLSMPYLGSSQSKTYQKQQPGSIQEDGTKPRQDLRSRGLCLMPLSCASFIHGFD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5206282 5209372 + Lsi01G006450.1 Lsi01g00645 653303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00645 343 MobiDBLite consensus disorder prediction 187 245 - -
Lsi01g00645 343 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 339 - -
Lsi01g00645 343 CDD bHLH_AtbHLH_like 245 292 IPR045239 -
Lsi01g00645 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Lsi01g00645 343 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 339 - -
Lsi01g00645 343 MobiDBLite consensus disorder prediction 190 242 - -
Lsi01g00645 343 MobiDBLite consensus disorder prediction 298 320 - -
Lsi01g00645 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 297 IPR036638 GO:0046983
Lsi01g00645 343 Gene3D - 245 307 IPR036638 GO:0046983
Lsi01g00645 343 MobiDBLite consensus disorder prediction 298 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00645 - - - csv:101208178 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00645 Lsi-Chr1:5206282 Lsi07g00339 Lsi-Chr7:3579414 1.04E-28 dispersed
Lsi06g00848 Lsi-Chr6:17897611 Lsi01g00645 Lsi-Chr1:5206282 2.02E-11 dispersed
Lsi01g00645 Lsi-Chr1:5206282 Lsi04g01698 Lsi-Chr4:24360908 5.32E-46 wgd
Lsi01g00645 Lsi-Chr1:5206282 Lsi08g01375 Lsi-Chr8:22053426 3.62E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1030 . . . . . . . . . . Cma03g00720 Cma07g00465 Car03g00660 Car07g00412 Sed14g1156 Cpe19g00825 Cpe10g00636 Bhi03g00920 Tan03g2025 Cmetu08g1183 . Hepe04g1550 . . Cla01g01940 Cam01g2028 Cec04g1688 Cco04g1752 Clacu01g2051 Cmu01g1927 Cre04g1601 . . . . Lsi01g00645 . . Cme08g00886 . . . . . . . . . Cmo03g00746 Cmo07g00463 . . . . . . . . . . . . . . . . . . . . . Csa06g03280 Chy02g00614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011982 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00645 Lsi_Chr01 FPKM 5.134575 6.203093 7.237988 9.810782 4.933506 3.88906 0.0 9.795156 9.062727 9.1054