Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00646 ATGACTCTCGAAGGGTCTGATCTTGAGAATTCCGAGGATGAAAAGAATACATCCATTGGTTCCTTCAAACAGAAGGCAGCCAGTGCCTCCTCCAAGTTCAGACATTCTATGACCAGAAGGGGCAGGAGAAGTAGTAAAGTCGCATGTGTGCAAATTGAAGATGTGCGCGACACAGAGGAGATGCAAGCCGTTGATGCCTTTCGCCAAGCGTTAATATTAGAGGAGTTGCTACCCGCCAAGCATGATGACTATCACATGATGCTCAGATTCATGAAGGCCAGGAAGTTTGATATTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCCAATGGCGTAAAGACTTTGGCACTGACACCATAGTGGAGGATTTTGTATTTGAGGAGCTCGATCAAGTTTTAGAGTACTATCCTCAAGGGCATCATGGTGTAGATAAGGAAGGACGGCCAGTATATATTGAGAAGTTGGGAAAGGTGGATCCCACAAAGTTAATGCAAGTCACTGATCTTGACCGCTATCTGAAATACCATGTACGGGAGTTTGAGAGGACATTCTTGGTAAAGTTTCCTGCCTGTTCAATAGCTTCCAAGAGGCACATTGATCAGAGTACAACAATCTTGGATGTCCAAGGAGTGTCAAATGCTTTATGCAAGTATCGTAGACATCTATCATCATGGTATATGATATTGATGGGCACTTACTTTGAACAAGCTGATCTTAAAAATTTTGAGGTCCTTGTTTTCAAGAATGTCATCTTTTCCCTTTTCCAATTCCACGGTGCAGGGCTTAAAAACTTCAATAAGACTGCTCGGGAACTCATTTCTCGCCTTCAGAAAATTGATGGCGAGAACTATCCAGAGACCTTGAATCGTATGTTCATCATTAATGCCGGTTCCGGATTTAGAATGCTGTGGAACACTGTAAAATCTTTTCTAGATCCAAAAACCACTGCAAAGATCCATGTTCTTGGAAATAAATACCAAAGCAAGTTGCTGGAGATTATTGATTCCAGTGAGTTGCCAGAGTTTCTTGGAGGCACCTGTACCTGTGCCGATCAAGGAGGATGCATGCGTTCTGATAAAGGTCCATGGAAGGACCCAAATATATTAAAGGTCCCAATTGATATCTCCATCTTGTGTTGTTTTCCATCTTTGATTAAAGTTCATCTGACTTTTACCATGGTCAACGATGGAAACCATAAATGTTCAAGGAAATATGGGGACAACGAGTTTCCGTTTTGCATTTCTTTTGATATGATCTCTTTAATATCATGCCCTGCTTCTGACTTCTTCCTAGTTGATGAGTTAGGCCATCACTTACCTGAAGTTAAGGATGTCTGCACCATCTCCCCCAAACATCCTTATCACGTTGAGAATCAATCACTCTCTACTCTCCATGAGGTTCCAATTACCAAGAATATTCAAGTGCCTTACAATGAGGATTGTGTCCCGGTGGTTGATAAAGGTGTGGATTTTTCATGGAAGATGGCGCCAGAAAAGAAAATGCTTGCCTCTTCCAAGGCAATAGATTATGCTTTAGCTGCTTCAGCAGAGGCCCCTGAGGGTCTTAAATCTAAGTTTCTCGCTAGTATTGTGGCCTTCCTAATGGGCATTTCTGCTACGGTGAGACTGGCTCGCACCATGCCTAAGAAGCTCACTAATGCCTCCATTTACTCCAAACCAGTTTACTGTGTCGACGACTCCATGTTCAAGGGTCAGGGTCAGCCACCTTTATTACAACCTTTGCCTGATTACATGTCGACCGTAAAACGTATGGCTGAATTGGAAGAGAGAGTCAATAACTTGTGCATTAAACCTGCTGACATGCCTCGCGAGAAAGAGGACTTACTGAATGCTACAATAAATCGTGTTGAAGTTCTCGAACAGGAGCTTACCCTATCCAAAAAGGTTTTGGAGGAAACACTGGCTAGACAAGCAGATATCTTTGCTTATATTGAGAAAAGGAAGAAAAAGAGGAAACTGATATCATTCCGCTGGTTGAAGGGATGA 2007 42.55 MTLEGSDLENSEDEKNTSIGSFKQKAASASSKFRHSMTRRGRRSSKVACVQIEDVRDTEEMQAVDAFRQALILEELLPAKHDDYHMMLRFMKARKFDIEKTKQMWSDMLQWRKDFGTDTIVEDFVFEELDQVLEYYPQGHHGVDKEGRPVYIEKLGKVDPTKLMQVTDLDRYLKYHVREFERTFLVKFPACSIASKRHIDQSTTILDVQGVSNALCKYRRHLSSWYMILMGTYFEQADLKNFEVLVFKNVIFSLFQFHGAGLKNFNKTARELISRLQKIDGENYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDSSELPEFLGGTCTCADQGGCMRSDKGPWKDPNILKVPIDISILCCFPSLIKVHLTFTMVNDGNHKCSRKYGDNEFPFCISFDMISLISCPASDFFLVDELGHHLPEVKDVCTISPKHPYHVENQSLSTLHEVPITKNIQVPYNEDCVPVVDKGVDFSWKMAPEKKMLASSKAIDYALAASAEAPEGLKSKFLASIVAFLMGISATVRLARTMPKKLTNASIYSKPVYCVDDSMFKGQGQPPLLQPLPDYMSTVKRMAELEERVNNLCIKPADMPREKEDLLNATINRVEVLEQELTLSKKVLEETLARQADIFAYIEKRKKKRKLISFRWLKG 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5208742 5214770 - Lsi01G006460.1 Lsi01g00646 653304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00646 668 MobiDBLite consensus disorder prediction 1 40 - -
Lsi01g00646 668 Pfam CRAL/TRIO domain 134 212 IPR001251 -
Lsi01g00646 668 Pfam CRAL/TRIO domain 252 345 IPR001251 -
Lsi01g00646 668 Coils Coil 262 282 - -
Lsi01g00646 668 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 391 660 - -
Lsi01g00646 668 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 256 371 - -
Lsi01g00646 668 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 220 - -
Lsi01g00646 668 SUPERFAMILY CRAL/TRIO domain 254 370 IPR036865 -
Lsi01g00646 668 SUPERFAMILY CRAL/TRIO domain 127 213 IPR036865 -
Lsi01g00646 668 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 7 220 - -
Lsi01g00646 668 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 256 371 - -
Lsi01g00646 668 CDD SEC14 129 346 IPR001251 -
Lsi01g00646 668 Pfam CRAL/TRIO, N-terminal domain 80 107 IPR011074 -
Lsi01g00646 668 SUPERFAMILY CRAL/TRIO N-terminal domain 57 124 IPR036273 -
Lsi01g00646 668 MobiDBLite consensus disorder prediction 20 34 - -
Lsi01g00646 668 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 128 351 IPR001251 -
Lsi01g00646 668 Gene3D - 52 115 - -
Lsi01g00646 668 Gene3D - 116 376 IPR036865 -
Lsi01g00646 668 SMART sec14_4 128 348 IPR001251 -
Lsi01g00646 668 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 391 660 - -
Lsi01g00646 668 SMART CRAL_TRIO_N_2 83 108 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00646 - - - csv:101208423 957.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00646 Lsi-Chr1:5208742 Lsi10g00391 Lsi-Chr10:5931431 1.07E-180 dispersed
Lsi11g00997 Lsi-Chr11:16791292 Lsi01g00646 Lsi-Chr1:5208742 2.88E-06 dispersed
Lsi02g01787 Lsi-Chr2:23635913 Lsi01g00646 Lsi-Chr1:5208742 3.21E-130 transposed
Lsi02g02087 Lsi-Chr2:27059274 Lsi01g00646 Lsi-Chr1:5208742 2.23E-12 transposed
Lsi01g00646 Lsi-Chr1:5208742 Lsi10g00390 Lsi-Chr10:5923363 4.64E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009311 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00646 Lsi_Chr01 FPKM 39.378349 38.893089 48.791992 51.87627 43.329456 43.009243 40.132034 78.566147 73.227859 74.668045