Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00648 ATGTTTGGTTTGAATGAGATGCCTGCGTCTGCATCTTCCCTGTTCGCGGCCTATGCTTCCTTCGCCACCACGGCGATGATGATCCGTTCCATGACCACCAATCTTCTTCCTCCCCAACTCATCTCCTTCATCTCTTCCATTTTCTTCTACTTTTTCCCTCCCAGTTCCGCTCTCATCACCACTCTCGTCATCGACAAGCAGTGCGACTACTTAAACAACCAGGTCTATGAAGCCGCAGAAATTTACCTCCGTACCAAAATCAACCCTTCAATGGATCGTCTTAAGGTTTCCAAAACCCCAAGGCAAAAAGCTGTTGCTCTCTCCATGGAAAAGGGTCAAACAATTATCGATCACTTTGAAGATATTCAACTCCAATGGGGATTTGTCGCTACAGAGAAGCAGAAAGATACTAGAATTAACGAAGAGAAGTGCCATTATGAGCTTGTGTTCCATAAGACATTCATGGATAGAGTCGTAAATTTCTATTTTCCTTACATCTTACGGAGAGCCAAGGAGATTAAAGCTCTGGATAATTTTGCCAAGCTCTGTAGCTCTAGTTGTTCCTACAGTGACGAAACCAGTGGCGAAAAACGTCGAGGCAATTGGGGATCTATCAGACTGGAACATCCCGCCACGTTTGATACTCTGGCATTGGACCCTGATTTGAAGACCATGATAATCGACGATTTGGATAGATTCGTGAAGAGGAAGGAATTTTATCAACGGGTTGGGAAGGCTTGGAAAAGGGGATATTTGTTGTATGGTCCTCCTGGTACAGGGAAATCAAGCTTGATCGCGGCCATGGCTAATTACCTCAAGTTTGATATCTACGATTTGGATCTCGCGGACATCCACAGCAATCACAGTCTAAGGACTTTATTACTTTCCACTACCAATCGCTCCATTTTGGTGATTGAAGATATCGACTGCAGCGTCAATTTGCAGAATCGAAAAACCGTCGAGAAATTCGAATCTTCCAGAAGCGAGTTGACGCTGTCCGGAATGCTGAATTTCATAGATGGATTGTGGTCGAGTTGCGGAGATGAGAAAATCATCATTTTCACGACGAATCACAAGGAGCGATTGGACCCGGCGTTGTTACGACCCGGTCGAATGGACGTTCACATAAACTTGGGTTACTGCACCTCAAAGGCGTTCAAGGTCTTGGCCACTAATTACCTCGGCGCCGAGGCTACTCATCACTGGCGTTACGAAGAAATCCAACGGCTAATCGATTGCGTCAACGTGACTCCGGCGGAGATTGCGGAAGAGCTTATGAAGAGCGACGACATTGACGTCGTGATAGAAGGTTTAGTCAAGTTTTTGAAGCTTAAGAGAGAAGAACAGAAGGCGGCGGAGGAAAAAGGCGATGAGATTGTGGAAGAAGATAAAGCAGCGCCGTAA 1404 45.8 MFGLNEMPASASSLFAAYASFATTAMMIRSMTTNLLPPQLISFISSIFFYFFPPSSALITTLVIDKQCDYLNNQVYEAAEIYLRTKINPSMDRLKVSKTPRQKAVALSMEKGQTIIDHFEDIQLQWGFVATEKQKDTRINEEKCHYELVFHKTFMDRVVNFYFPYILRRAKEIKALDNFAKLCSSSCSYSDETSGEKRRGNWGSIRLEHPATFDTLALDPDLKTMIIDDLDRFVKRKEFYQRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLDLADIHSNHSLRTLLLSTTNRSILVIEDIDCSVNLQNRKTVEKFESSRSELTLSGMLNFIDGLWSSCGDEKIIIFTTNHKERLDPALLRPGRMDVHINLGYCTSKAFKVLATNYLGAEATHHWRYEEIQRLIDCVNVTPAEIAEELMKSDDIDVVIEGLVKFLKLKREEQKAAEEKGDEIVEEDKAAP 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5227484 5229000 + Lsi01G006480.1 Lsi01g00648 653306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00648 467 CDD AAA 248 380 - -
Lsi01g00648 467 PANTHER BNAA06G25360D PROTEIN 7 450 - -
Lsi01g00648 467 PANTHER BCS1 AAA-TYPE ATPASE 7 450 - -
Lsi01g00648 467 Pfam ATPase family associated with various cellular activities (AAA) 252 379 IPR003959 GO:0005524|GO:0016887
Lsi01g00648 467 Gene3D - 377 447 - -
Lsi01g00648 467 Gene3D - 204 376 IPR027417 -
Lsi01g00648 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 431 IPR027417 -
Lsi01g00648 467 SMART AAA_5 247 382 IPR003593 -
Lsi01g00648 467 Pfam Domain associated at C-terminal with AAA 36 129 IPR025753 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00648 - - K08900 csv:101208666 729.939
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00648 Lsi07g00245 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00648 Lsi-Chr1:5227484 Lsi01g00651 Lsi-Chr1:5238863 0 dispersed
Lsi01g00647 Lsi-Chr1:5218173 Lsi01g00648 Lsi-Chr1:5227484 0 tandem
Lsi01g00648 Lsi-Chr1:5227484 Lsi01g00649 Lsi-Chr1:5230764 1.80E-21 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00648 Lsi_Chr01 FPKM 5.79805 7.777238 23.791391 28.484331 116.798027 123.577003 109.154213 3.176757 2.774538 2.162196