Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00654 ATGGAGTTTGTGTGTGAAAAGTTGAAGATGTTGTGTAAGGAAGGGCTTGTGTTCTTAGCTCAAAACTACTTTAACACCACACTGGCAGCACTTCTTTCCATAGCTATTTTAGTGTTGGTTTCGAAAGTTTGCTGGAGACAGAGTAGCAAGAATGTTGGAGGAATTCCTGGTCAGTTGGGGTTACCTTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGTACCAAAGGGTGTTACCACTTTGTCAGACTCCGCAGGTTGTGGCATGGTAGGTGGTTCAAGACAAGGCTATTTGGAAAGATACATGTGTTTGTTCCAAGTGCAGAAGGTGCAAAAGCAATATTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGAGATGCTGTTGGAGAGAGTAGTTTACTATGCGTTTCCCATGAGAATCACAGAAGGATTAGACGTCTTCTAGCTGATCCTTTCTCCATGACTTCTCTGTCTAAGTTTGTCAAAGAATTTGACGCCATGCTCTCCAAAAGGCTAAAGAAACTAGTAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTTAGCATGAAGATAACATTTGATTCCATGTGTAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGACAGATTGAGAAAGACTGTACAGCCGTCTCTGAGGCCATGTTATCTTTCCCATTCATGATTCCAGGAACTAGGTACTACAAAGGCATCAAGGCACGAAGCCGACTAATGGAAAGATTTAGAGAGATAATTTCCCAACGGCGGAGGGGAGAGGAGTCACCAGAAGACTTCCTGCAGTCAATGTTGCAGAGAGATTCATATCCTTCGAATGAAAAGCTGGATGACTCAGAGATAATGGATAACCTTTTGACACTGATAATTGCAGGCCAAACCACCACAGCTGCTGCCATGATGTGGAGTATCAAGTTCCTGGACGAGAACAGAGAGGCCCAAGAAAGGCTGCGGGAAGAACAATTGTCAATTCTACAAAAGAAGGAAGATGGAGAATTGCTTACCCTTCAAGATCTTAACAAAATGTCCTACGGTTCAAAGGTTGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAGGGGATTGCAGATTAGAAGGCACGACCTGTCTTGGAATTAACATGGCCAAATTAACAATGTTGGTCTTCTTGCACAGAATGACTGGAGGGTACAAGTGGACGGTTGATGATCCAGATCCTTGCCTTGAAAAGAAGGCACACATCCCTAGGCTGAGAAGCGGATGCCCCATTACCTTGAAGACCTTGTAA 1332 42.87 MEFVCEKLKMLCKEGLVFLAQNYFNTTLAALLSIAILVLVSKVCWRQSSKNVGGIPGQLGLPFVGETFSFLSANNSTKGCYHFVRLRRLWHGRWFKTRLFGKIHVFVPSAEGAKAIFANDFVQFNKGYVKSMGDAVGESSLLCVSHENHRRIRRLLADPFSMTSLSKFVKEFDAMLSKRLKKLVKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCTAVSEAMLSFPFMIPGTRYYKGIKARSRLMERFREIISQRRRGEESPEDFLQSMLQRDSYPSNEKLDDSEIMDNLLTLIIAGQTTTAAAMMWSIKFLDENREAQERLREEQLSILQKKEDGELLTLQDLNKMSYGSKVVKETLRMSNVLLWFPRVALGDCRLEGTTCLGINMAKLTMLVFLHRMTGGYKWTVDDPDPCLEKKAHIPRLRSGCPITLKTL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5257789 5261269 + Lsi01G006540.1 Lsi01g00654 653312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00654 443 PRINTS E-class P450 group I signature 391 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00654 443 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00654 443 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00654 443 PANTHER CYTOCHROME P450 FAMILY PROTEIN 390 441 - -
Lsi01g00654 443 PANTHER CYTOCHROME P450 FAMILY PROTEIN 26 388 - -
Lsi01g00654 443 SUPERFAMILY Cytochrome P450 45 441 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00654 443 Gene3D Cytochrome P450 45 390 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00654 443 PANTHER CYTOCHROME P450 26 26 388 - -
Lsi01g00654 443 PANTHER CYTOCHROME P450 26 390 441 - -
Lsi01g00654 443 Coils Coil 324 344 - -
Lsi01g00654 443 Pfam Cytochrome P450 56 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00654 - - - csv:101209645 768.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00654 Lsi-Chr1:5257789 Lsi02g02017 Lsi-Chr2:26173003 6.15E-66 dispersed
Lsi01g00654 Lsi-Chr1:5257789 Lsi08g01378 Lsi-Chr8:22068324 4.13E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00654 Lsi_Chr01 FPKM 2.155043 1.923826 0.295622 0.652516 0.0 0.0 0.0 1.070428 1.190669 1.147474