Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00656 ATGACGACACTAGGTGAAAGCAAAACTCCCCGAGTTTTCTGTATCGCGACGGCTGATACAAAGCTTGAGGAGCTCCGTTTCATTTCCGATTCCGTTCGATCCAATCTGAATTGCTTCTCTTCTTCTTTCAAGGTTGAAGTGACGGTTGTTGATGTTTCTACCAGCCGTCAGAATGGGATCAAGAGTTTGGATGATTTCGTCTTCGTGTCGAGGGAGGATGTTCTCTCTTGCTATGATCTCACTGGAAATCAGCTTCCCGATGACCGGGGAAAAGCAATCTCGATAATGAGTAAAGCACTTGAATCTTATCTTAGTAAAGCCAAGGAGGATGGGACAATTGCTGGAGCTATAGGACTTGGAGGCAGTGGAGGGACGTCTCTCATATCCTCTGCGTTAAAATCTCTTCAAATTGGAATACCTAAGCTTATCGTCTCAACGGTTGCGAGTGGTCAGACAGAATCTTATATCGGGACATCCGATCTTATACTTTTCCCGTCTATAGTGGATGTGTGTGGGATTAATAGTGTCAGTAGGGTTGTTTTATCCAATGCTGGTGCTGCATTTGCTGGAATGGTGGTCGGACGACTTGAGAAGTTGAAAGATTCGTGTGATTCCAATGAAAAACCAACAGTGGGTTTAACAATGTTTGGAGTTACGACTCCTTGTGTCAATGCTGTCAAAGAAAGATTGCTTAAAGAAGGCTACGAGAGCCTTGTTTTTCATGCTACTGGGGTAGGGGGGAAGGCAATGGAATCTCTGGTCAGAGAGGGATTTATCCAGGGAGTCTTGGACATCACAACAACAGAGGTAGCAGACTATTTAATGGGAGGTGTCATGGCTTGTGACAGTTCCCGCTTTGATGCCATCATAGGGAAGAGAATCCCATTAGTTCTAAGTGTAGGAGCACTGGACATGGTGAACTTTGGATCCAAAGATACAATACCCTCCAATTATCACGGAAGGAATATATATGAACATAATAAACAGGTTTCGCTTATGCGAACTACGGTGGAGGAGAACAGAAAAATTGCTCATTTTATAGCTGATAAGATTAACAATTCATCGGCAAAGGTTCGTGTGTGCCTGCCTCAGAATGGTGTATCTGCTCTGGATGTACCAGGGAAGCCATTTTATGATCCTGAGGCTACTGCTACTCTTATAGAGGAACTACAGAAGCTTATTCAGTTAAATAATGATAGGCAGGTGAAGGTATACCCTTATCATATTAATGATCCTGAGTTCGCTGAGGTATTGGTTAACTCATTCTTGGAAATTACTTCAAAAGATACGAAGGAATCATGTGGCCCAAAACTTGTTTTATCTGAAACTAGTCAAGACCTTCAAAAGGACTCCAGTTCTGAGTCCAATTTGTCTGCCAATGGAAACATTACATACAGTCCTAGTGACTTCCCAGAGGCAAGACCAGAAACTTTGCGAAGAACACAAATGATATTGGAGAACTTAAAAGCTCAAATACTTAAAGGAGTGCCCATAATAGGGGCTGGTGCAGGCACTGGGATATCTGCCAAGTTTGAAGAAGTTGGCGGTGTTGATCTGATAGTAGTGTACAACTCAGGGCGCTTTCGCATGGCTGGGAGGGGTTCTTTAGCAGGCTTGCTGCCTTTTGCCGATGCTAATGCCATAGTGCTTGAAATGGCCAATGAAGTATTGCCTGTGGTGGAGACAGTTCCCGTGCTTGCTGGAGTATGTGCTTCTGATCCATTTCGTCGAATGGATTACTTTCTAAAGCAGGTGGAGTCAATTGGATTCTCTGGAGTGCAGAATTTTCCTACTGTTGGATTGTTTGATGGTAACTTCAGACAAAACCTTGAAGAAACAGGAATGGGATATGGATTGGAGGTCAAGATGATTGAGAGGGCCCACAAAATGGGTCTCTTGACAACCCCATACGCTTTTAACGAAGAGGAAGCCTTAGAAATGGCAAAAGCCGGTGCAGACATTATAGTTGCCCACATGGGACTCACTACCTCTGGATCTATTGGAGCCAAAACTGCCCTATCAATGGAGGAAAGTGTAGTCCGTGTACAGGCTATAGCAGATGCTGCTCATAGGATCAATCCTAATGTTTTAGTGCTCTGTCATGGAGGTCCTATATCGGGCCCTACTGAAGCAGCATTCATTCTGAAGAGAACCAAGGGAGTTCATGGATTTTATGGTGCATCGAGCATGGAGAGGCTACCAGTCGAACAAGCAATAACTAGCACTGTCCAAGAATACTCAATTTCCTTCCCACTCCCTCTCCTCCTTTCTCGTTCATCTCCGGCGATTCGCCACCTCCTGACGCTCTTTCGTAGACGGCGGTGCAGCGACAACGTTACCCACGAACGAGCGACCGGCATTCTAAGGCGGTTTCCGGCGACCCTAAGCCGTTTGAGCAAGGTTTCGAGGTCGTTTGCAGATCGTACCATCAAGATTTGGGATGTTGCAACTGCAAAGTTAAAACTCACATTGACAGGCCATACTGATCAAATACGAGGTGTTGCTGTTAGCAGCAAACATACCTACATATTTTCGGCTGGTGATGATAAACAAGTCAAATGCTGGGACCTCGAACAAAACAAGGTAATCAGTTCCCCTGGTCATTTGAGTGGTGTCTAG 2619 44.83 MTTLGESKTPRVFCIATADTKLEELRFISDSVRSNLNCFSSSFKVEVTVVDVSTSRQNGIKSLDDFVFVSREDVLSCYDLTGNQLPDDRGKAISIMSKALESYLSKAKEDGTIAGAIGLGGSGGTSLISSALKSLQIGIPKLIVSTVASGQTESYIGTSDLILFPSIVDVCGINSVSRVVLSNAGAAFAGMVVGRLEKLKDSCDSNEKPTVGLTMFGVTTPCVNAVKERLLKEGYESLVFHATGVGGKAMESLVREGFIQGVLDITTTEVADYLMGGVMACDSSRFDAIIGKRIPLVLSVGALDMVNFGSKDTIPSNYHGRNIYEHNKQVSLMRTTVEENRKIAHFIADKINNSSAKVRVCLPQNGVSALDVPGKPFYDPEATATLIEELQKLIQLNNDRQVKVYPYHINDPEFAEVLVNSFLEITSKDTKESCGPKLVLSETSQDLQKDSSSESNLSANGNITYSPSDFPEARPETLRRTQMILENLKAQILKGVPIIGAGAGTGISAKFEEVGGVDLIVVYNSGRFRMAGRGSLAGLLPFADANAIVLEMANEVLPVVETVPVLAGVCASDPFRRMDYFLKQVESIGFSGVQNFPTVGLFDGNFRQNLEETGMGYGLEVKMIERAHKMGLLTTPYAFNEEEALEMAKAGADIIVAHMGLTTSGSIGAKTALSMEESVVRVQAIADAAHRINPNVLVLCHGGPISGPTEAAFILKRTKGVHGFYGASSMERLPVEQAITSTVQEYSISFPLPLLLSRSSPAIRHLLTLFRRRRCSDNVTHERATGILRRFPATLSRLSKVSRSFADRTIKIWDVATAKLKLTLTGHTDQIRGVAVSSKHTYIFSAGDDKQVKCWDLEQNKVISSPGHLSGV 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5262234 5269733 - Lsi01G006560.1 Lsi01g00656 653314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00656 872 Gene3D Uncharacterised protein family UPF0261, NC domain 208 428 - -
Lsi01g00656 872 MobiDBLite consensus disorder prediction 442 473 - -
Lsi01g00656 872 Gene3D - 797 872 IPR015943 GO:0005515
Lsi01g00656 872 Gene3D Aldolase class I 476 727 IPR013785 -
Lsi01g00656 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 824 865 IPR001680 GO:0005515
Lsi01g00656 872 Gene3D Uncharacterised protein family UPF0261, NN domain 3 198 - -
Lsi01g00656 872 CDD Tm-1-like 11 425 IPR044122 -
Lsi01g00656 872 SUPERFAMILY WD40 repeat-like 806 864 IPR036322 GO:0005515
Lsi01g00656 872 PANTHER UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) 9 747 - -
Lsi01g00656 872 SMART WD40_4 817 856 IPR001680 GO:0005515
Lsi01g00656 872 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 482 672 IPR015813 GO:0003824
Lsi01g00656 872 Pfam Uncharacterised protein family (UPF0261) 10 425 IPR044122 -
Lsi01g00656 872 Pfam Phosphoenolpyruvate hydrolase-like 484 747 IPR009215 -
Lsi01g00656 872 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 824 861 - -
Lsi01g00656 872 Pfam WD domain, G-beta repeat 821 856 IPR001680 GO:0005515
Lsi01g00656 872 MobiDBLite consensus disorder prediction 442 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00656 - - - csv:101205995 1293.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00656 Lsi-Chr1:5262234 Lsi09g01439 Lsi-Chr9:22372093 3.03E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1025 . . . . . . Bma09g00089 . . . . Cma07g00471 . Car07g00415 Sed14g1148 Cpe19g00822 . Bhi03g00927 Tan03g2012 . . Hepe04g1543 . . Cla01g01933 Cam01g2018 Cec04g1676 Cco04g1740 Clacu01g2039 Cmu01g1915 Cre04g1591 . . . . Lsi01g00656 . . Cme08g00875 Blo05g00808 . . . . Bpe06g00039 . . . . Cmo07g00469 . . . . . . . . . . . . . . . . . . . . . Csa06g03270 Chy02g00622 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005595 0 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 36