Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00663 ATGGTCTTATTCCGTCGGCATCACATCCGGAGAAATTTTACAGTTTTGGCAGTCGCCGGAACGGAGACGAAGGATAATCTTCATCGTCTAAATACAAAATCCGAACCTTCAACCCTGAACACCCATTTTGCAAATCAGGTAAATTTGGCCGAAGCTAACAGCGAGTTGAAACAATTAGTGAGAACCAGTCACTTGAAAGATGCACGCGACATGTTCGATCAAATGCCTCAAAGGGATGAGGTTTCATGGACTAATATTATTTCTGGGTATGTCAATGCCGCAGACTCCTCTGAAGCCTTGCTTTTGTTCTCAAAGATGCGACTTCAGTCTGAACTCCGAATCGATCCATTTCTACTTAGTCTTGGTCTTAAGGCTTGTGGGCTCGGTTTGAATTATTTTTATGGTACAAACTTGCATGGGTTTTCAGTCAAAACAGGTCTAGTCAACTCTGTTTTCGTGGGTAGCGCTCTTCTCGACATGTATATGAAAATTGGAGAAATTGGGAGAAGTTGTAAAGTGTTCGATGAAATGCCGACAAGAAATGCGGTGACTTGGACGGCAGTTATAACTGGGCTTGTTCGTGCAGGGTATAACGAGGAAGGGCTGTCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCAGTGCTGATTCAGGTGCACTGAATCATGGAAGAGCAATTCATACACAGACACTAAAGAAAGGATTTGATGAGAACTCCTTCGTGGCCAATTCGCTGGCCACCATGTATAACAAATGTGGTAAGCTAGATTATGGCTTGTATATGTTTGGAAAGATGAGGACTCCGGATGTCGTTTCGTGGACAACAATTGTAACGACATACGTTCAAATGGGCAAGGAGGAATGTGGGCTTCAGGCATTTAGAAGAATGCAGGAAAGCAATGTGATTCCAAATGAATATACATTTGCTGCTGTTATCTCTGGTTGTGCTAATCTTGCAAGGTTGAAGTGGGGGGAACAGCTACATGCTCATGTTTTATGTGTTGGGTTTCTGAATGCTTTGTCAGTTGCTAACTCTATCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCAGTTTCAAAGGTATTTTGTTCAATGAATTTTAGAGACGTCATTACTTGGAGCACTATAATTGCAGCATATTCTCAAGTAGGCTATGGTGAAGAAGCTTTTGAGTATCTGTCATGGATGAGAAGTGAAGGACCGAAGCCAAATGAGTTCGCCCTGGCTAGCGTGCTGAGTGTATGTGGAAGTATGGCGATTCTCGAGCAGGGGAAGCAATTGCATGCTCATGTCTTGTCTGTTGGGTTAGAACAGACATCCATGGTATGTAGTGCTCTTATTATTATGTATGCCAAATGTGGGAGCATCACGGAAGCTTCTAAAATCTTTATGGATTCATTGAAAGACGATGTCATTTCATGGACAGCAATGATCAGTGGGTATGCTGAACATGGACATAGCCAAGAAGCCATTGAATTGTTTGAAAATATCCAAAAGGTTGGTTTGAGACCAGACTCAGTGACCTTCATTGGCGTTCTTACTGCTTGTAGCCATGCAGGAATGGTCGACCTTGGTTTCCACTACTTCAACTCGATGAGCAAAGATTATCACATCACTCCTTCAAAAGAACACTATGGATGTATGATTGATCTTCTTTGTCGAGCAGGGCGATTAAGTGATGCAGAGAGCTTGATCAGAAGCATGCCATTTCATCAGGACGATGTTGTCTGGTCTACTTTGCTGAGGGCATGTAGAATACACGGTGATGTTGATTGTGGACAACGTGCTGCTGCTGAAGTTCTAAAGTTAGATCCAAATTGTGCTGGGACTCACATAACCTTAGCAAACATTTTTGCTGCCAAGGGAAAGTGGAAGGAAGCAGCAAATATAAGAATGTTAATGAAATCAAAGGGGGTGGTTAAGGAGCCAGGATGGTCTTCGATAAAGGTCAAGGATAGTGTTTTCGCATTTGTTGCTGGAGATCGTTCTCATCCACAAGGAGAAAACATATACAGTATGTTGGAGGAGCTGGCTTCAGGAATGGAAATCTATATTCTTGAATTGGACCATTTAGTAACTGATATGGAAGAATAG 2136 42.46 MVLFRRHHIRRNFTVLAVAGTETKDNLHRLNTKSEPSTLNTHFANQVNLAEANSELKQLVRTSHLKDARDMFDQMPQRDEVSWTNIISGYVNAADSSEALLLFSKMRLQSELRIDPFLLSLGLKACGLGLNYFYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYNEEGLSYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQMGKEECGLQAFRRMQESNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLCVGFLNALSVANSIMTMYSKCGELASVSKVFCSMNFRDVITWSTIIAAYSQVGYGEEAFEYLSWMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSITEASKIFMDSLKDDVISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFHYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLSDAESLIRSMPFHQDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSIKVKDSVFAFVAGDRSHPQGENIYSMLEELASGMEIYILELDHLVTDMEE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5328955 5331090 - Lsi01G006630.1 Lsi01g00663 653321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00663 711 Pfam E motif 601 662 IPR046848 -
Lsi01g00663 711 Pfam E+ motif 670 691 IPR046849 -
Lsi01g00663 711 Pfam PPR repeat 385 414 IPR002885 -
Lsi01g00663 711 Pfam PPR repeat 155 180 IPR002885 -
Lsi01g00663 711 Pfam PPR repeat 81 107 IPR002885 -
Lsi01g00663 711 Pfam PPR repeat 457 479 IPR002885 -
Lsi01g00663 711 Pfam PPR repeat family 484 531 IPR002885 -
Lsi01g00663 711 Pfam PPR repeat family 181 226 IPR002885 -
Lsi01g00663 711 Pfam PPR repeat family 281 330 IPR002885 -
Lsi01g00663 711 PANTHER OS01G0913400 PROTEIN-RELATED 381 486 - -
Lsi01g00663 711 PANTHER OS01G0913400 PROTEIN-RELATED 483 705 - -
Lsi01g00663 711 PANTHER OS01G0913400 PROTEIN-RELATED 31 385 - -
Lsi01g00663 711 Gene3D Tetratricopeptide repeat domain 400 525 IPR011990 GO:0005515
Lsi01g00663 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Lsi01g00663 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lsi01g00663 711 SUPERFAMILY TPR-like 382 642 IPR011990 GO:0005515
Lsi01g00663 711 Gene3D Tetratricopeptide repeat domain 526 662 IPR011990 GO:0005515
Lsi01g00663 711 PANTHER - 381 486 - -
Lsi01g00663 711 PANTHER - 483 705 - -
Lsi01g00663 711 PANTHER - 31 385 - -
Lsi01g00663 711 Pfam PPR repeat 553 582 IPR002885 -
Lsi01g00663 711 Gene3D Tetratricopeptide repeat domain 232 348 IPR011990 GO:0005515
Lsi01g00663 711 Gene3D Tetratricopeptide repeat domain 42 128 IPR011990 GO:0005515
Lsi01g00663 711 Gene3D Tetratricopeptide repeat domain 138 231 IPR011990 GO:0005515
Lsi01g00663 711 TIGRFAM PPR: pentatricopeptide repeat domain 559 582 IPR002885 -
Lsi01g00663 711 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Lsi01g00663 711 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Lsi01g00663 711 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Lsi01g00663 711 TIGRFAM PPR: pentatricopeptide repeat domain 486 520 IPR002885 -
Lsi01g00663 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Lsi01g00663 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00663 - - - cmax:111478417 1313.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00663 Lsi-Chr1:5328955 Lsi05g01250 Lsi-Chr5:20296971 2.68E-59 dispersed
Lsi01g00663 Lsi-Chr1:5328955 Lsi05g00088 Lsi-Chr5:1603644 5.53E-06 transposed
Lsi01g00663 Lsi-Chr1:5328955 Lsi03g02044 Lsi-Chr3:31779615 1.47E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1005 . . . Bda10g00142 . . . . . . Cma03g00734 . Car03g00669 . . . . . . . . . . . . . . . . . . . . . . Lsi01g00663 . . . . . . . . . . . . Cmo03g00764 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009680 1 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00663 Lsi_Chr01 FPKM 4.604167 4.549511 8.605204 6.400516 4.113662 4.5257 3.282435 6.049533 6.324742 6.326028