Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00666 ATGCGGAGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAATCAGTCATTTGGAGGAAGCACTGAGTTTTGCATATCGTATAACAAGGTTAACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCATCCTGGATTCTCATATCTGGTTGATGAAGCAAATCCTTCGCCTAAGGCAACATATGATGATCCATCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCGCGGAACACTATGCCACCTCTAGTGGACAGTAATGACTCTGAACCATTATTCGAGGATAACCTTATTTCTCAAAATGGATATGGTAGAGGTGTTTGTCGTTCTCGTGAGGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCACCTTCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGGGGAACTACTCTAGAAGGACTTTGAGTTGTGGGGAAGCTGCTTCTGAGATAATTTCGGACGATCATTCTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCTATGAAAGAAGCAATGGAAAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGGAGAGGAAGAAGGAAGGGGTCCATGGACGGGGGAGACTGGATTCAAAAAATGATATGAGAGAAAAGGAAGGAAGATTGACTAAGTTTCCAAATCAATTTAGAACTTTGGGCGATGAAAGTGTGCAGGGTATTGGGGAAATTCATGGCCATGAAATGCATTTGCCTGCTAGAGAGGAGAGGCAAAAGGATGTGAGGGCAACTGAAGTTTTTTCAACACACTATGGTGGAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTACCAATTAAAAGAGGGACTAGATTTCTTGTGTCCGAGAACTATGATGGCTGCAGCGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCCGGAAAGGAATTTGAGTCGGTGAACAATGATGCTATTTCCAACTTCGTGACTGGACAAATGGGAGTAGAGACCAACAATGCATGGGAGAACGATAAAGATCAAGACAAGAAAGCAAAACCATTCCATACAGCTCATGTTCTGAATGAGGAGGTGAAGAATTTGGAGAATATGGTCCTTAGAAAGGAGGAAGATAAGATAAAACTAAAGCCAAATAGAAACGAGACTAGGCAACAAGAGCAAGTGAAATTAAAAATTCACCAAGGTGTTTGTGATCTTGAAGCAAATGATAGGAAAATTGGAGTTGTTCAAGAGTTTATGGAAGTAAAAAAGCAAATGTTTTATGCTAGTGAACCAGAGAAATGTTTGCCTATTGAGTTTAGACAACTGGACAGTGAGCTAAAAGTTGAGCAACCTGTTTCATCAAGGGATAGTGAACAAGAAAAGAAAAAGGTTGTTGAAAGAAAGGAAAATGGAAATATTCTCAAGGAGTCTCATAGAAAAGAAAACAATGCAAATAAAATGGAAGCCAATGAGAATGAGAAAAGAGAGATGTTCACAGAGGCTTGTGAAAGGGAAAGACTTGAGCAAAAAATGAGGGTGTTCCGTGAGCAACCAGATGATATGAAAAGACTTAATTTGGTTCTTGAGGATGACAACTTTAAGGGACAGATGGCTCCTGAAAGACAACTGGAAGGAGTTGACGGGATGGAAGATCATGGGGAAAGGGGAAAAGAGGCTGCCAAAGTTGGAGGAAGTGAGACACCTGAATTAGCTCACGAGAGAGAAGATGACAACAAATGGCCGCAAGCTTTTCTGTACAAAGAAGTATGTGAGAAAGGAGTTGATGATTCATTTCAGCATTTGAACATTGAAGGCATGCCAAGAGATGTGGGTAAGTGTAAAGTGACTCCGATGTTGGTTAAAGATTCACAAGATAGCGCAGATCTCAAGGGTACAAGTTTGGAGCAAGATGAATTAGAGAGATCGGAGGACAGACAGAAAGTAAATTCAACAATAGGATCTCAAGTATATGTGGAAGTGAATGATTTGGGGATATCTGCTGCTGCATTTCAAATGAACAATGACAAAGACCACTTACCTATGGGACTAGCATGTCCAACGGGAATGTCTGAAGAATTCTCTGTTGTAGGTGAAAGGGGAGAGAGAAAGACTACAGTCACAGTTAATGAAACTTCGTCAGAAATTGGTGGAACTGAAAATCTTCAATTTAACAAAATTCCTTGTGAGTCGAGTGTGTGCCAGGCAGAGGTAGAACACCATAAAGTTCCAGTTGAAATTGAAGATGCAGATATTCAACTTTCTTTCGATGAACTGACTAAAAGAGCAGCAGAAGAAACCTGCTGTCAATCCAAACTTGGACATACACAATCAGAACCATCTAACTCGGAAGATGCACTTTCATCTGAAAACTCATCAAGCATTGATGAGGGAGAAAACGTAGTTACGATGGAAGATATGAAAACATCATTTCCTCTGGATAGAAGTGATGAGAAAGCAAGCCAGGCTGATGTTTGCATGGAAGAGTTTGTAGGGAGAAAGAAGTTTGTTACTAGATTGGGTTCTGATCCTGAACACCCAGAAAGTAACTTGTTCTGTCGTATGGAAGATAAAGTGAAGCCCGCTGACCAGGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGGTCAATGTAAGGGCTGAGAAAGGAAGTGGATTGAAGTCAACTTGGCCAAATATTTCAGAAAGGACACAAAAGAATGGGGAATTCTCCCGTGAGGTCAATGCAAATCAGGCCCCGGAAAGAAAGGAAAAGATTGTAAACCAGAGCCATACATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGTGAAGCAGAACTTGAGAATGACATTCTTCGAAAATTGGAAGAAGAGAGGGAAAGGGAGAGAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTTCTCTTGAACCACGAGATAGAGTAGGTGCCGAAGCTCGTGAAAGGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGGCTGAGGCACGTGAAAGATTGGAAAAGGCATGTGCAGAGGCGAGAGAAAATTCATTGGCTGGGAAGGCGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCCGCTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCGGAGAAAGCCATGTCTGACAAGACTTCCTTTGGGGTGAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTACAATCTCAGAGCTTTGGCTCTGCCACTGCTTCAAGATATGCCTACTACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGGTGCAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACATTGCAATATATCCTTGGACCCGATAGTGGTTGGCAGCCAATTCCCTTAACGGAAGTCATAACTGCCGCTGCTGTAAAGAAAGCTTACAGGAAAGCTACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAGTATTCAGCAAAAGTACGAGCGCCTCGGGGAGGATCCTACCGTTGGCTTGTTGGAAGGAAGGCTGAAGAGATCAACCAGTTTGCCAACCCGAGTACTCGGTTCTGGCTCGAGGAAACCAACATCTGAGATTATATTTCCCGAGTTTGCTCAAGCGAAACAGAAGCAGTCGAAGAAAGCTAACAAAGGAGGACACCCTCTTTTCAGTTTCTTTGATTTTCGCCGCAAGAGGAAGTCAACAGCCAGGCCTGAATTTGCTAGGTATCTAGAGTATTTGAAGGAAGGAGGACTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTTTAAATGA 4131 42.99 MRRTPAGTESLSDCSDHSGNSHCMSNGDSNQSFGGSTEFCISYNKVNRESNGNISNGKIHVTQLEMHPGFSYLVDEANPSPKATYDDPSLQTNDDNYLNIDFDTGKVKGKHPRNTMPPLVDSNDSEPLFEDNLISQNGYGRGVCRSREDFITVSEISLRTEPSQVPPPSRPPPKFATKKGNYSRRTLSCGEAASEIISDDHSLPLFDVEVDASSSAAASAAAMKEAMEKAQAQLQNAKDLWERKKEGVHGRGRLDSKNDMREKEGRLTKFPNQFRTLGDESVQGIGEIHGHEMHLPAREERQKDVRATEVFSTHYGGEELLTAAEKTVPIKRGTRFLVSENYDGCSEWKDATEFFELARADISGKEFESVNNDAISNFVTGQMGVETNNAWENDKDQDKKAKPFHTAHVLNEEVKNLENMVLRKEEDKIKLKPNRNETRQQEQVKLKIHQGVCDLEANDRKIGVVQEFMEVKKQMFYASEPEKCLPIEFRQLDSELKVEQPVSSRDSEQEKKKVVERKENGNILKESHRKENNANKMEANENEKREMFTEACERERLEQKMRVFREQPDDMKRLNLVLEDDNFKGQMAPERQLEGVDGMEDHGERGKEAAKVGGSETPELAHEREDDNKWPQAFLYKEVCEKGVDDSFQHLNIEGMPRDVGKCKVTPMLVKDSQDSADLKGTSLEQDELERSEDRQKVNSTIGSQVYVEVNDLGISAAAFQMNNDKDHLPMGLACPTGMSEEFSVVGERGERKTTVTVNETSSEIGGTENLQFNKIPCESSVCQAEVEHHKVPVEIEDADIQLSFDELTKRAAEETCCQSKLGHTQSEPSNSEDALSSENSSSIDEGENVVTMEDMKTSFPLDRSDEKASQADVCMEEFVGRKKFVTRLGSDPEHPESNLFCRMEDKVKPADQVEDKGQKVSVQGVNVRAEKGSGLKSTWPNISERTQKNGEFSREVNANQAPERKEKIVNQSHTSKGKESERVRSEAELENDILRKLEEEREREREREKDRMPIDRISLEPRDRVGAEARERAERAALERMTAEARQRALAEARERLEKACAEARENSLAGKAATMEARVKAERAAVERATAEARERAAEKAMSDKTSFGVRERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSQSFGSATASRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERARLAETLDADVRRWSSGKEGNLRALLSTLQYILGPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYERLGEDPTVGLLEGRLKRSTSLPTRVLGSGSRKPTSEIIFPEFAQAKQKQSKKANKGGHPLFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 1376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5344701 5352060 - Lsi01G006660.1 Lsi01g00666 653324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 1092 1149 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 1092 1122 - -
Lsi01g00666 1376 Coils Coil 407 427 - -
Lsi01g00666 1376 SUPERFAMILY Chaperone J-domain 1176 1265 IPR036869 -
Lsi01g00666 1376 Coils Coil 981 1008 - -
Lsi01g00666 1376 Coils Coil 540 560 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 674 697 - -
Lsi01g00666 1376 Coils Coil 220 244 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 159 182 - -
Lsi01g00666 1376 Coils Coil 1041 1068 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 819 850 - -
Lsi01g00666 1376 PANTHER AUXILIN, ISOFORM A 5 1272 - -
Lsi01g00666 1376 Coils Coil 1074 1094 - -
Lsi01g00666 1376 Gene3D DnaJ domain 1169 1277 IPR036869 -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 937 957 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 819 848 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 84 99 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 911 1031 - -
Lsi01g00666 1376 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 5 1272 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 681 697 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 596 626 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 1123 1149 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 959 1031 - -
Lsi01g00666 1376 MobiDBLite consensus disorder prediction 72 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00666 - - - bhj:120074172 2024.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00666 Lsi-Chr1:5344701 Lsi08g00460 Lsi-Chr8:12296349 1.00E-36 dispersed
Lsi01g00666 Lsi-Chr1:5344701 Lsi02g00919 Lsi-Chr2:8829069 1.32E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00666 Lsi_Chr01 FPKM 6.420677 6.372738 0.203997 0.293434 1.65994 1.345911 1.703403 0.204904 0.172664 0.185866