Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00667 ATGTGTCCAGCTTTGAACTTAATGAAGCAGAGGAAGGATGGTTATGAACCATCTGATACTGAGACTGAATGGCAAGAAAGCCCTTGGAATGACCCTAAGGAGAAGAAACTTGTACTGGATTACAATAATCGAAGAACTGATTCGGCAGTGTCCAAGAAGTTCAGTACAGTGGCAAATGTTTCTCCTCCTGGTTCGAGAAGAAACGGTGGGAAAACGCCTCACAGGCCAGCCAAAGACGACACTGTTCTTGTTATGCTTCAGAGAAACATCAGCCCCTTGTCAAGAGCAGAAAGAAGAAGACATGAGTCTCCTTTTAAAGCTGCAGGGGAGGAAATTGGAAGCTCTAGCATGAGGTCAAGAAAAGAGGAGAAGTTGACTTCTTCTCATGGGAGTAATAGAATAAGTCAAAAACCGGGCTACAGTAGGAGATCAGTGACTGCTCCAAGGTTGAGGATGAGAGATGAACATATGAATGCTGTTAATGATTTATCTCAGAGGAGAGAGAGAGCAGCTCCAACCTTGAAGGTCGGCTCCATCCTGCAACAGCCAAAGGAGGTTTCCCAGGTGAATTCTCTATCTATTGGTGAAATGAATGAGATGCTTGCAGATGGAAGGGCTAATAGAGGTTTGGTTTTCAATGACCCGGTGGTTGAAAGCACGGGGTCGATCTCGCCGGGGGATATATTCTTTTCGCGTGATGGCTTGCCTGTTGGGATGAATAACAATGTCACAGCAAAGAGAAATGCGTTCAAAAACTATATAAGTCCAAAGCCCACATTTGTGTCTAAAAAGAATGTTGATACTTATAATCAAGTGGAAGTAAATGCTAATGGTAGAGGGGTTTCTTCTGCTGGAGCAGGTTTGTCAACGACCACAACTAGTAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCATTGAAAATAGTAAGATCAGTGATGTGAGTGGTAGAACAAGTGAAAGTACTAGAAGGTTTGTTGCCAATAGACGAAAGAAGAAGAACGATATATGGTTTTCTTGTATGAGGAATGGGACTTGCAGGACAACGAAATCGCCTGAAAAGCGACCATTTGATGAAGCTTTATATATTGAAAAGGCAAATGTTGTTGAATACTTGAAACCCTTCTGGGCGGATCAGCATCGGCCGGTTTCCTTAAATGGGTTCACTTTCCATAAGCATGAGGCCCAACTTCTCAAGCAATTAGCTTCACAGGACAGTTTTCCCCACATTCTGTTCAAAGGTCCAAGCGGATCTGGTAAAAGAGTGCTGATGATGGCTCTTCTGCGTGAGATATATGGTGATTCATGTTGGAATGTTTCTCATGATTTGCGACGTTTCCAGATTCAGGAAAGAAAACTGACGCAAGTCTTCGTTCCATTGACATCAAGTGCTCACCATGTGGAACTAAATCTAAGCTCCGAAGCAAATGCTAAGTATGCTTTGCTGGGATTGGCTAAAGAAATAGGCAGTGAATATTCCATTAATATGGAAGCAAGAAATGTCAATCCGAAGGCAAATTTCAAAGTGGTAGTCCTTTTAGATGTAGACAAAGCCGCAGAAGATATTCAGCACTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCCTGCAAAGTAGTACTCTGTTGTGAAGACGACTCAGGCATCCTTGAATCGGTGATAAGCCGCTGCAAAGTTATTAAAATTAACCCTCCTGTAACTCATGAAATCATGGATGTACTTATCCAAATAGCAGAGAAGGAGGAATTTGACTTACCCATGAACTTTGCTTCTAAGATTGCTACTAAAGCAAAGCAAAACCTGAGAAAAGCAATCATGGCCCTTGAAGCATGCAAGGCACACAATTATCCATTTTCTGATGACCAGCCAATCCCTATTGGATGGGAAGAGGCCGTGGTAGAACTCGCAGCCCATATCCTCGAAGACCCATCCAATCCAAAATTACACCAAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCAGTTCATCCTAAACTAATTCTCCAGAAGCTTGTGGAACAATTTCTGAAAAGAATTGAGATGAGATCAAGGAGGGAACTTTATTATTGGCATGCTTATTATAACAAGAGACTCCCAATTGAAACTGGAACAGGTGCTTTACCCAAATTAGAAGCTATTTGTGATTGTTCTTTAAGCTGTAGCGATTCAGTGAATGACCTTTGGTTCAAACTGGAACCGACATTCTCTCTGTTTTTCTTAGTGGGTTTGGTGAATATGGAAAACAGTGCTGGAGGAGGAAATTCTTCGAATATAGGATTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCATGTCTCGAAGATCTGTCGCTGCTCACCCTTGGCACGATTTGGAGATTGGACCCGGTGCACCTTCGGTTTTCAATTGTGTTGTCGAAATTGGCAAAGGCAGCAAGGTTAAGTATGAGCTTGACAAGGCCAGTGGCCTTATAAAAGTCGACCGCGTACTTTACTCATCGGTTGTTTACCCACACAATTATGGTTTCATCCCACGGACAATTTGTGAAGATAGTGATCCTATGGATGTTCTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGATCAAGGAGAAAGAGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCACTATACGGACATCAAGGAGATTCCCCCACACCGGCTGGCCGAAATTCGCCGATTCTTCGAAGACTACAAGAAGAACGAGAACAAAAAAGTCGATGTGGAAGACTTCCTGCCAGCGGAGGCTGCCATGGATGCCATTAAGTACTCCATGGACTTGTATGCTGCCTACATAGTTGAGAGCTTGAGGCATTCTGAAAAATGTATAAGTGGATGA 2910 42.75 MCPALNLMKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRTDSAVSKKFSTVANVSPPGSRRNGGKTPHRPAKDDTVLVMLQRNISPLSRAERRRHESPFKAAGEEIGSSSMRSRKEEKLTSSHGSNRISQKPGYSRRSVTAPRLRMRDEHMNAVNDLSQRRERAAPTLKVGSILQQPKEVSQVNSLSIGEMNEMLADGRANRGLVFNDPVVESTGSISPGDIFFSRDGLPVGMNNNVTAKRNAFKNYISPKPTFVSKKNVDTYNQVEVNANGRGVSSAGAGLSTTTTSSAAVSRENSSRISIENSKISDVSGRTSESTRRFVANRRKKKNDIWFSCMRNGTCRTTKSPEKRPFDEALYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLASQDSFPHILFKGPSGSGKRVLMMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINMEARNVNPKANFKVVVLLDVDKAAEDIQHLLRWIMDGYKDACKVVLCCEDDSGILESVISRCKVIKINPPVTHEIMDVLIQIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEACKAHNYPFSDDQPIPIGWEEAVVELAAHILEDPSNPKLHQVKEKIQKLLVDSVHPKLILQKLVEQFLKRIEMRSRRELYYWHAYYNKRLPIETGTGALPKLEAICDCSLSCSDSVNDLWFKLEPTFSLFFLVGLVNMENSAGGGNSSNIGFPRIRLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAMDAIKYSMDLYAAYIVESLRHSEKCISG 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5360402 5370495 - Lsi01G006670.1 Lsi01g00667 653325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00667 969 SUPERFAMILY Inorganic pyrophosphatase 778 964 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi01g00667 969 MobiDBLite consensus disorder prediction 93 107 - -
Lsi01g00667 969 Gene3D Inorganic pyrophosphatase 780 958 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi01g00667 969 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 188 719 - -
Lsi01g00667 969 Gene3D - 629 723 - -
Lsi01g00667 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 620 IPR027417 -
Lsi01g00667 969 CDD pyrophosphatase 798 950 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi01g00667 969 MobiDBLite consensus disorder prediction 1 31 - -
Lsi01g00667 969 CDD AAA 395 562 - -
Lsi01g00667 969 Gene3D - 569 626 - -
Lsi01g00667 969 Pfam Inorganic pyrophosphatase 801 952 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi01g00667 969 Gene3D - 376 567 IPR027417 -
Lsi01g00667 969 MobiDBLite consensus disorder prediction 57 78 - -
Lsi01g00667 969 MobiDBLite consensus disorder prediction 91 145 - -
Lsi01g00667 969 ProSitePatterns Inorganic pyrophosphatase signature. 848 854 - -
Lsi01g00667 969 SUPERFAMILY post-AAA+ oligomerization domain-like 629 715 IPR008921 GO:0003677|GO:0006260
Lsi01g00667 969 Hamap Inorganic pyrophosphatase [ppa]. 797 953 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lsi01g00667 969 PANTHER OS02G0704966 PROTEIN 188 719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00667 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101218071 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00667 Lsi-Chr1:5360402 Lsi09g01707 Lsi-Chr9:25622732 5.48E-116 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00667 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.267827 0.215855 0.0 0.125918 0.404445 0.255257 0.285758