Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00668 ATGGATAAACTGGCTTTGGTTTTGGCCGGAAAATTTGGAGAAGCACTACCTAATCTTCTCAAAGTGGTCACCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCAAAAACAATTCCTCCATCCCGCCTCGTTTCATCTCCTGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTTCTCCTTCTCGGAAGTACCTCGGTTCCAAAGTCTCACTCTCACTCACTCTTTCACACTGCTCCTCGTCCTTTGGATCTTCTGCATCTTCTCTTGGCTCCAGCCCGTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGACTCAAACGGCAGTGCCTGGACTTGGAATCGAGCTTCAGAGAGTGCAATTGGAAACAACGTGGGGGTTTTGGGGGGCGAAAAGGGAGCGGCGACCGTTGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGTATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTCGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATTTCTTGGTTATCAGACGGGGAAGAGAGTGATAAAGATCGATCCCTGATTTTTCACACTTTTAGCAACACCGGCTGGTTTGTATACGGAGCCATTCTTGAAATCTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCGTTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTGAAGAAAAATAGTTCTTCTGCATCTCCAATAGTTAATGGAGAAGAACTAGACAAGAAACCTCTTCTGTTGGAAACTCTTGTCCTATCATCATTGGAAAAATTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCGATAAGAGATTGAACAACATTGTTTCAGTTCTTACTGAGAACCAACCATTGTATCCTGAGCTTTATCTGTACAGTTCAGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCATCACCGCACGTCGACCATTACAGGACATACCCTGATATATACTCATCACAGCTTCACAAACTCAAATCAGCGAAGATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAGGGACGCCGCAAGCGGCGGTGGGGACGGCTTCGACATCGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACCCACAACGCAAAAATCCTCCGTGGATTAAGAGACAGAATCGACTCCGACATGGTCTCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACGGCCAACCGCTTGATATCCGTCGCGTACGGCGAAGGAACCGCCGTGGACCGGACAAGAACTTCAGTGACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAATGAATTTCAGGGGTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGGAAATGGGGAACAACCCAGTGAAGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGATTGAAGGGAAACTAAGCGAGACCGAGTTAGGGGACCGAGTGAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTACATCAGGTGTTTTTGGACATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATAGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGTTCAAACATGGACGTGACTCACAGTCTCCATTACAATCAACATGGGCTCAGACCATGTCTCTGCTCGAGAACTGCTCAAACATGAAGCAATTGAAACAAATTCACGCTCAAATGATCAAAACAGAGCTCGCCACAGAACCTAAATTAGCTACTAAGTTTTTAACCCTCTGCACTTCACCCCATTTCGGCGATTTGCTTTACGCGCAAAGGGTCTTCAATGGAATCACCAGCCCCAACACTTTCATGTGGAACGCCATTATAAGAGCCTACTCTAACAGTAAAGAACCAGAATTAGCATTTCTCTTGTATCATCAGATGCTTTCTTCTTCGGTACCGCACAATTCCTACACCTTCCCTTTCTTGCTCAAAGCTTGTCGTAATTTTTCGGCCATGGGTGAGGCACTTCAAGTTCATGGACTGGTTATCAAACTGGGATTTGGGTCGGATGTTTTTGCATTGAATGCTCTGCTTCATGTCTACGCTTTGTGTGGTGACATTCAGTATGCACGCCAACTGTTTGACAATATTCCTGAAAGAGATGTTGTTTCTTGGAACATAATGATTGATGGGTATATCAAATCTGGGGATGTGAAAACGGCTTATGGGGTTTTCTTGGACATGCCATTGAAGAATGTGGTCTCGTGGACGTCGTTGATTTCGGGGCTAGTTGAGGCAGGACAGAGCGTAGAAGCTTTGAGTCTTTGCTATGAGATGCAGAATGCAGGATTTGAACTTGATGGTGTTGCTATTGCGAGTTTGCTTACTGCTTGTGCAAATCTTGGAGCGTTGGATCAAGGAAGATGGCTCCATTTCTATGTTCTCAACAATGGAGTCCACGTCGATCGAGTAATTGGCTGTGCTCTGGTGAATATGTACTTAAAATGTGGGGATATGGAAGAAGCCTTGAGAGTGTTTGGGAAACTGAGGGGTGATCAGAAAGATGTGTATGTTTGGACGGCTATGATTGATGGCTTTGCCATTCATGGGCGTGGAGTGGAAGCTCTGGAATGGTTTAACCGAATGCAGAGAGAAGGAATAAGACCAAATTCCATCACTTTCACTACAGTTTTAAGGGCCTGTGGCTATGCAGGACTGGTTGAAGAAGGAAAAGTGTTATTCGAGAGCATGAAAAGTCTCTATAACTTGAGCCCATCTATTGAGCATTATGGGTGTATGGTTGATCTTTTGGGTCGAGCTGGGCTGCTGGAGGAAGCGAAGGAGTTGATCAAGAAGATGCCCATGAAACCTAATGCTGTAATATGGGGAGCTTTGCTAAAGTTGAGAATCAACATAAGCTTACCACTCCTTCCTCCCGTTCAGGCCTGTTGGATTCATAGAGATTTTCTGGTGGGTAGCCAAATCGGAGCCCACCTGATGGAAGTTGATTCAGATCATAGCGGGCGGTACATTCAGTTGGCTACCATTTTAGCTGCAGAAGGTAAGTGGAAAGAAGCAGCTGAAGTGAGGTTGAAGATGAAGAATCTGAGAGTCCCAATTCCCCCAGGAAAGAGTTCAATAACTTTGAATGGCATTGTTCATGAATTTCTTGCTGGGCATCAAGATCATCCACATATGGAGCAGATTCATTTGAAACTGAAAGAGGTTGCAGAGAGGCTACAACAAGACGAAGGTTATGAACCTGCTACTAAAGATTTATTACTTGACCTTGAGAATGAGGAGAAAGAGGCTGCAATGGCTCAACATAGTGAGAAGTTGGCCATTGCTTTTGGATTGATCAATACGAAACCAGGAGCGACGATTCGAGTTGTTAAGAATCTTAGGGTCTGCGGAGATTGTCACGCCGTTGCGAAGCTCGTATCTCGAATCTATTGTAGAGAGATTATAATGCGAGATAGAGTTCGATTCCACCATTTTAGAGATGGGAATTGTTCTTGCAAAGATTACTGGTAG 4041 45.11 MDKLALVLAGKFGEALPNLLKVVTGSAAMEAPVRAFRPCVLNRRLFSKTIPPSRLVSSPESNRSAIFRQSSTYFHSSPSRKYLGSKVSLSLTLSHCSSSFGSSASSLGSSPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGVLGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSDGEESDKDRSLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPIVNGEELDKKPLLLETLVLSSLEKFFSVALKLPDVDKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVDHYRTYPDIYSSQLHKLKSAKMNDLMTKSFLSYVELKKQAQRDAASGGGDGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQGLREKVVADHKEDLRRRYFGGNGEQPSEEQVEKIMSGSLKLETIEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLYYANQMKRKNKKWFKHGRDSQSPLQSTWAQTMSLLENCSNMKQLKQIHAQMIKTELATEPKLATKFLTLCTSPHFGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSKEPELAFLLYHQMLSSSVPHNSYTFPFLLKACRNFSAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGDIQYARQLFDNIPERDVVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVHVDRVIGCALVNMYLKCGDMEEALRVFGKLRGDQKDVYVWTAMIDGFAIHGRGVEALEWFNRMQREGIRPNSITFTTVLRACGYAGLVEEGKVLFESMKSLYNLSPSIEHYGCMVDLLGRAGLLEEAKELIKKMPMKPNAVIWGALLKLRINISLPLLPPVQACWIHRDFLVGSQIGAHLMEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKNLRVPIPPGKSSITLNGIVHEFLAGHQDHPHMEQIHLKLKEVAERLQQDEGYEPATKDLLLDLENEEKEAAMAQHSEKLAIAFGLINTKPGATIRVVKNLRVCGDCHAVAKLVSRIYCREIIMRDRVRFHHFRDGNCSCKDYW 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5379274 5390042 + Lsi01G006680.1 Lsi01g00668 653326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1024 1058 IPR002885 -
Lsi01g00668 1346 SMART SynN_4 470 597 IPR006011 GO:0016020
Lsi01g00668 1346 Pfam PPR repeat family 788 835 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat family 1023 1070 IPR002885 -
Lsi01g00668 1346 CDD SynN 478 625 IPR006011 GO:0016020
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 890 924 IPR002885 -
Lsi01g00668 1346 SUPERFAMILY t-snare proteins 474 693 IPR010989 GO:0016020|GO:0016192
Lsi01g00668 1346 Gene3D - 642 711 - -
Lsi01g00668 1346 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 725 1320 - -
Lsi01g00668 1346 Coils Coil 482 502 - -
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 789 823 IPR002885 -
Lsi01g00668 1346 Pfam E motif 1164 1216 IPR046848 -
Lsi01g00668 1346 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 725 1320 - -
Lsi01g00668 1346 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 644 700 IPR000727 -
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 719 837 IPR011990 GO:0005515
Lsi01g00668 1346 Gene3D - 470 601 - -
Lsi01g00668 1346 Pfam Eukaryotic protein of unknown function (DUF829) 170 421 IPR008547 -
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 1073 1231 IPR011990 GO:0005515
Lsi01g00668 1346 CDD SNARE_syntaxin1-like 644 697 - -
Lsi01g00668 1346 SMART tSNARE_6 633 700 IPR000727 -
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 859 977 IPR011990 GO:0005515
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 978 1072 IPR011990 GO:0005515
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1059 1089 IPR002885 -
Lsi01g00668 1346 Pfam DYW family of nucleic acid deaminases 1254 1346 IPR032867 GO:0008270
Lsi01g00668 1346 Pfam PPR repeat 1098 1123 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 892 921 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 997 1020 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 923 953 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 863 890 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 892 921 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 923 956 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 1026 1059 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 1061 1095 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 792 822 IPR002885 -
Lsi01g00668 1346 Pfam Syntaxin 478 673 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00668 Lsi-Chr1:5379274 Lsi06g00054 Lsi-Chr6:441356 0 dispersed
Lsi01g01181 Lsi-Chr1:10035743 Lsi01g00668 Lsi-Chr1:5379274 1.14E-48 dispersed
Lsi09g00858 Lsi-Chr9:9878933 Lsi01g00668 Lsi-Chr1:5379274 1.60E-75 dispersed
Lsi10g00145 Lsi-Chr10:2351402 Lsi01g00668 Lsi-Chr1:5379274 7.36E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00668 - - bhj:120073771 1149.81