Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00668 ATGGATAAACTGGCTTTGGTTTTGGCCGGAAAATTTGGAGAAGCACTACCTAATCTTCTCAAAGTGGTCACCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCAAAAACAATTCCTCCATCCCGCCTCGTTTCATCTCCTGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTTCTCCTTCTCGGAAGTACCTCGGTTCCAAAGTCTCACTCTCACTCACTCTTTCACACTGCTCCTCGTCCTTTGGATCTTCTGCATCTTCTCTTGGCTCCAGCCCGTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGACTCAAACGGCAGTGCCTGGACTTGGAATCGAGCTTCAGAGAGTGCAATTGGAAACAACGTGGGGGTTTTGGGGGGCGAAAAGGGAGCGGCGACCGTTGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGTATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTCGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATTTCTTGGTTATCAGACGGGGAAGAGAGTGATAAAGATCGATCCCTGATTTTTCACACTTTTAGCAACACCGGCTGGTTTGTATACGGAGCCATTCTTGAAATCTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCGTTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTGAAGAAAAATAGTTCTTCTGCATCTCCAATAGTTAATGGAGAAGAACTAGACAAGAAACCTCTTCTGTTGGAAACTCTTGTCCTATCATCATTGGAAAAATTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCGATAAGAGATTGAACAACATTGTTTCAGTTCTTACTGAGAACCAACCATTGTATCCTGAGCTTTATCTGTACAGTTCAGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCATCACCGCACGTCGACCATTACAGGACATACCCTGATATATACTCATCACAGCTTCACAAACTCAAATCAGCGAAGATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAGGGACGCCGCAAGCGGCGGTGGGGACGGCTTCGACATCGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGACGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACCCACAACGCAAAAATCCTCCGTGGATTAAGAGACAGAATCGACTCCGACATGGTCTCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACGGCCAACCGCTTGATATCCGTCGCGTACGGCGAAGGAACCGCCGTGGACCGGACAAGAACTTCAGTGACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAATGAATTTCAGGGGTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGGAAATGGGGAACAACCCAGTGAAGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGATTGAAGGGAAACTAAGCGAGACCGAGTTAGGGGACCGAGTGAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTACATCAGGTGTTTTTGGACATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATAGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGTTCAAACATGGACGTGACTCACAGTCTCCATTACAATCAACATGGGCTCAGACCATGTCTCTGCTCGAGAACTGCTCAAACATGAAGCAATTGAAACAAATTCACGCTCAAATGATCAAAACAGAGCTCGCCACAGAACCTAAATTAGCTACTAAGTTTTTAACCCTCTGCACTTCACCCCATTTCGGCGATTTGCTTTACGCGCAAAGGGTCTTCAATGGAATCACCAGCCCCAACACTTTCATGTGGAACGCCATTATAAGAGCCTACTCTAACAGTAAAGAACCAGAATTAGCATTTCTCTTGTATCATCAGATGCTTTCTTCTTCGGTACCGCACAATTCCTACACCTTCCCTTTCTTGCTCAAAGCTTGTCGTAATTTTTCGGCCATGGGTGAGGCACTTCAAGTTCATGGACTGGTTATCAAACTGGGATTTGGGTCGGATGTTTTTGCATTGAATGCTCTGCTTCATGTCTACGCTTTGTGTGGTGACATTCAGTATGCACGCCAACTGTTTGACAATATTCCTGAAAGAGATGTTGTTTCTTGGAACATAATGATTGATGGGTATATCAAATCTGGGGATGTGAAAACGGCTTATGGGGTTTTCTTGGACATGCCATTGAAGAATGTGGTCTCGTGGACGTCGTTGATTTCGGGGCTAGTTGAGGCAGGACAGAGCGTAGAAGCTTTGAGTCTTTGCTATGAGATGCAGAATGCAGGATTTGAACTTGATGGTGTTGCTATTGCGAGTTTGCTTACTGCTTGTGCAAATCTTGGAGCGTTGGATCAAGGAAGATGGCTCCATTTCTATGTTCTCAACAATGGAGTCCACGTCGATCGAGTAATTGGCTGTGCTCTGGTGAATATGTACTTAAAATGTGGGGATATGGAAGAAGCCTTGAGAGTGTTTGGGAAACTGAGGGGTGATCAGAAAGATGTGTATGTTTGGACGGCTATGATTGATGGCTTTGCCATTCATGGGCGTGGAGTGGAAGCTCTGGAATGGTTTAACCGAATGCAGAGAGAAGGAATAAGACCAAATTCCATCACTTTCACTACAGTTTTAAGGGCCTGTGGCTATGCAGGACTGGTTGAAGAAGGAAAAGTGTTATTCGAGAGCATGAAAAGTCTCTATAACTTGAGCCCATCTATTGAGCATTATGGGTGTATGGTTGATCTTTTGGGTCGAGCTGGGCTGCTGGAGGAAGCGAAGGAGTTGATCAAGAAGATGCCCATGAAACCTAATGCTGTAATATGGGGAGCTTTGCTAAAGTTGAGAATCAACATAAGCTTACCACTCCTTCCTCCCGTTCAGGCCTGTTGGATTCATAGAGATTTTCTGGTGGGTAGCCAAATCGGAGCCCACCTGATGGAAGTTGATTCAGATCATAGCGGGCGGTACATTCAGTTGGCTACCATTTTAGCTGCAGAAGGTAAGTGGAAAGAAGCAGCTGAAGTGAGGTTGAAGATGAAGAATCTGAGAGTCCCAATTCCCCCAGGAAAGAGTTCAATAACTTTGAATGGCATTGTTCATGAATTTCTTGCTGGGCATCAAGATCATCCACATATGGAGCAGATTCATTTGAAACTGAAAGAGGTTGCAGAGAGGCTACAACAAGACGAAGGTTATGAACCTGCTACTAAAGATTTATTACTTGACCTTGAGAATGAGGAGAAAGAGGCTGCAATGGCTCAACATAGTGAGAAGTTGGCCATTGCTTTTGGATTGATCAATACGAAACCAGGAGCGACGATTCGAGTTGTTAAGAATCTTAGGGTCTGCGGAGATTGTCACGCCGTTGCGAAGCTCGTATCTCGAATCTATTGTAGAGAGATTATAATGCGAGATAGAGTTCGATTCCACCATTTTAGAGATGGGAATTGTTCTTGCAAAGATTACTGGTAG 4041 45.11 MDKLALVLAGKFGEALPNLLKVVTGSAAMEAPVRAFRPCVLNRRLFSKTIPPSRLVSSPESNRSAIFRQSSTYFHSSPSRKYLGSKVSLSLTLSHCSSSFGSSASSLGSSPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGVLGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSDGEESDKDRSLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPIVNGEELDKKPLLLETLVLSSLEKFFSVALKLPDVDKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVDHYRTYPDIYSSQLHKLKSAKMNDLMTKSFLSYVELKKQAQRDAASGGGDGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQGLREKVVADHKEDLRRRYFGGNGEQPSEEQVEKIMSGSLKLETIEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLYYANQMKRKNKKWFKHGRDSQSPLQSTWAQTMSLLENCSNMKQLKQIHAQMIKTELATEPKLATKFLTLCTSPHFGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSKEPELAFLLYHQMLSSSVPHNSYTFPFLLKACRNFSAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGDIQYARQLFDNIPERDVVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVHVDRVIGCALVNMYLKCGDMEEALRVFGKLRGDQKDVYVWTAMIDGFAIHGRGVEALEWFNRMQREGIRPNSITFTTVLRACGYAGLVEEGKVLFESMKSLYNLSPSIEHYGCMVDLLGRAGLLEEAKELIKKMPMKPNAVIWGALLKLRINISLPLLPPVQACWIHRDFLVGSQIGAHLMEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKNLRVPIPPGKSSITLNGIVHEFLAGHQDHPHMEQIHLKLKEVAERLQQDEGYEPATKDLLLDLENEEKEAAMAQHSEKLAIAFGLINTKPGATIRVVKNLRVCGDCHAVAKLVSRIYCREIIMRDRVRFHHFRDGNCSCKDYW 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5379274 5390042 + Lsi01G006680.1 Lsi01g00668 653326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1024 1058 IPR002885 -
Lsi01g00668 1346 SMART SynN_4 470 597 IPR006011 GO:0016020
Lsi01g00668 1346 Pfam PPR repeat family 788 835 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat family 1023 1070 IPR002885 -
Lsi01g00668 1346 CDD SynN 478 625 IPR006011 GO:0016020
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 890 924 IPR002885 -
Lsi01g00668 1346 SUPERFAMILY t-snare proteins 474 693 IPR010989 GO:0016020|GO:0016192
Lsi01g00668 1346 Gene3D - 642 711 - -
Lsi01g00668 1346 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 725 1320 - -
Lsi01g00668 1346 Coils Coil 482 502 - -
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 789 823 IPR002885 -
Lsi01g00668 1346 Pfam E motif 1164 1216 IPR046848 -
Lsi01g00668 1346 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 725 1320 - -
Lsi01g00668 1346 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 644 700 IPR000727 -
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 719 837 IPR011990 GO:0005515
Lsi01g00668 1346 Gene3D - 470 601 - -
Lsi01g00668 1346 Pfam Eukaryotic protein of unknown function (DUF829) 170 421 IPR008547 -
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 1073 1231 IPR011990 GO:0005515
Lsi01g00668 1346 CDD SNARE_syntaxin1-like 644 697 - -
Lsi01g00668 1346 SMART tSNARE_6 633 700 IPR000727 -
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 859 977 IPR011990 GO:0005515
Lsi01g00668 1346 Gene3D Tetratricopeptide repeat domain 978 1072 IPR011990 GO:0005515
Lsi01g00668 1346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1059 1089 IPR002885 -
Lsi01g00668 1346 Pfam DYW family of nucleic acid deaminases 1254 1346 IPR032867 GO:0008270
Lsi01g00668 1346 Pfam PPR repeat 1098 1123 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 892 921 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 997 1020 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 923 953 IPR002885 -
Lsi01g00668 1346 Pfam PPR repeat 863 890 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 892 921 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 923 956 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 1026 1059 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 1061 1095 IPR002885 -
Lsi01g00668 1346 TIGRFAM PPR: pentatricopeptide repeat domain 792 822 IPR002885 -
Lsi01g00668 1346 Pfam Syntaxin 478 673 IPR006011 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00668 - - - bhj:120073771 1149.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00668 Lsi-Chr1:5379274 Lsi06g00054 Lsi-Chr6:441356 0 dispersed
Lsi01g01181 Lsi-Chr1:10035743 Lsi01g00668 Lsi-Chr1:5379274 1.14E-48 dispersed
Lsi09g00858 Lsi-Chr9:9878933 Lsi01g00668 Lsi-Chr1:5379274 1.60E-75 dispersed
Lsi10g00145 Lsi-Chr10:2351402 Lsi01g00668 Lsi-Chr1:5379274 7.36E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g992 . . . Bda10g00138 . . . Bma15g00995 . . Cma03g00739 . Car03g00675 . . . Cpe10g00621 Bhi03g01316 . . . Hepe04g1524 . . Cla01g01917 Cam01g2004 Cec04g1661 Cco04g1722 Clacu01g2023 Cmu01g1899 Cre04g1576 . . Cone6ag1634 . Lsi01g00668 . . Cme08g00856 . Blo06g00135 . . . . . . . Cmo03g00768 . . . . . . . . . . . . . . . . . . . . . . Csa06g03249 Chy02g00639 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01147 . 8 338 SNARE and Associated Proteins AT3G24350 65.1 4.7e-102 368.2
Lsi01g01659 . 1 309 SNARE and Associated Proteins AT1G08560 69.0 1.0e-100 363.6
Lsi01g00668 . 428 710 SNARE and Associated Proteins AT2G18260 55.2 2.3e-81 299.3
Lsi03g01810 . 19 254 SNARE and Associated Proteins AT3G11820 80.5 1.4e-102 369.8
Lsi01g01181 . 26 282 SNARE and Associated Proteins AT3G11820 73.2 2.4e-102 369.0
Lsi02g00706 . 31 281 SNARE and Associated Proteins AT3G11820 66.9 7.8e-93 337.4
Lsi03g01319 . 12 236 SNARE and Associated Proteins AT3G11820 55.6 1.7e-63 240.0
Lsi01g01181 . 33 282 SNARE and Associated Proteins AT3G52400 65.2 6.5e-85 311.2
Lsi03g01810 . 1 255 SNARE and Associated Proteins AT3G52400 63.7 3.0e-82 302.4
Lsi02g00706 . 1 281 SNARE and Associated Proteins AT3G52400 56.7 1.5e-81 300.1
Lsi03g01319 . 11 236 SNARE and Associated Proteins AT3G52400 52.7 3.7e-56 215.7
Lsi02g00706 . 1 299 SNARE and Associated Proteins AT4G03330 68.5 2.4e-107 385.6
Lsi01g01181 . 1 298 SNARE and Associated Proteins AT4G03330 51.5 9.0e-78 287.3
Lsi03g01810 . 1 253 SNARE and Associated Proteins AT4G03330 59.1 2.9e-76 282.3
Lsi03g01319 . 10 236 SNARE and Associated Proteins AT4G03330 57.3 3.3e-64 242.3
Lsi02g00706 . 1 299 SNARE and Associated Proteins AT1G61290 78.6 4.7e-127 451.1
Lsi01g01181 . 1 293 SNARE and Associated Proteins AT1G61290 56.3 7.5e-85 310.8
Lsi03g01810 . 1 254 SNARE and Associated Proteins AT1G61290 63.8 7.1e-83 304.3
Lsi03g01319 . 10 236 SNARE and Associated Proteins AT1G61290 52.9 2.9e-60 229.2
Lsi02g00706 . 1 299 SNARE and Associated Proteins AT1G11250 77.6 4.7e-124 441.0
Lsi01g01181 . 1 293 SNARE and Associated Proteins AT1G11250 57.0 6.1e-87 317.8
Lsi03g01810 . 1 254 SNARE and Associated Proteins AT1G11250 63.0 9.7e-85 310.5
Lsi03g01319 . 12 236 SNARE and Associated Proteins AT1G11250 54.7 2.3e-62 236.1
Lsi03g01319 . 12 259 SNARE and Associated Proteins AT3G03800 76.6 5.4e-99 357.8
Lsi03g01319 . 12 154 SNARE and Associated Proteins AT5G08080 83.2 1.2e-60 229.9
Lsi07g01177 . 1 272 SNARE and Associated Proteins AT5G16830 56.5 8.0e-73 270.8
Lsi07g01177 . 1 272 SNARE and Associated Proteins AT5G46860 62.5 1.3e-77 286.6
Lsi07g01177 . 1 190 SNARE and Associated Proteins AT4G17730 76.4 1.7e-72 269.6
Lsi07g01177 . 65 272 SNARE and Associated Proteins AT1G32270 55.3 1.4e-50 197.2
Lsi04g00969 . 1 286 SNARE and Associated Proteins AT5G05760 64.5 6.6e-90 327.8
Lsi08g01147 . 8 338 SNARE and Associated Proteins AT3G24350 65.1 4.7e-102 368.2
Lsi11g00612 . 1 327 SNARE and Associated Proteins AT5G26980 75.8 1.1e-126 449.9
Lsi02g02441 . 1 286 SNARE and Associated Proteins AT5G26980 64.8 2.7e-88 322.4
Lsi11g00612 . 1 329 SNARE and Associated Proteins AT4G02195 64.7 3.7e-106 381.7
Lsi02g02441 . 1 286 SNARE and Associated Proteins AT4G02195 66.9 3.6e-93 338.6
Lsi11g00612 . 1 328 SNARE and Associated Proteins AT3G05710 75.4 9.3e-129 456.8
Lsi02g02441 . 1 286 SNARE and Associated Proteins AT3G05710 62.5 2.8e-85 312.4
Lsi02g01877 . 1 225 SNARE and Associated Proteins AT1G16240 69.5 2.4e-83 305.4
Lsi05g00543 . 23 286 SNARE and Associated Proteins AT1G16240 57.6 7.1e-75 277.3
Lsi02g01877 . 1 225 SNARE and Associated Proteins AT1G79590 68.7 2.3e-82 302.4
Lsi05g00543 . 23 286 SNARE and Associated Proteins AT1G79590 58.3 4.3e-76 281.6
Lsi09g01890 . 38 229 SNARE and Associated Proteins AT1G28490 72.9 3.2e-68 255.0
Lsi03g02035 . 38 327 SNARE and Associated Proteins AT3G09740 72.6 5.0e-109 391.0
Lsi10g01278 . 1 254 SNARE and Associated Proteins AT3G09740 60.7 4.9e-80 294.7
Lsi03g02035 . 38 327 SNARE and Associated Proteins AT3G45280 58.7 1.6e-83 306.2
Lsi10g01278 . 1 254 SNARE and Associated Proteins AT3G45280 57.7 1.4e-74 276.6
Lsi03g02035 . 38 324 SNARE and Associated Proteins AT3G61450 62.1 1.4e-90 329.7
Lsi10g01278 . 1 251 SNARE and Associated Proteins AT3G61450 54.9 2.4e-71 265.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002433 5 3 5 4 2 1 2 1 2 2 1 1 2 1 2 1 1 3 2 1 2 3 2 2 1 1 1 2 1 4 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00668 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.996902 4.639412