Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00669 | ATGTCCTTCAAAAGCTTTTTTCGGGAGCTAAGGGAAATAAAAGATGGAATTAGAATCAAGACGAAACGAGGGGGGGAAGGGAGGAACTGGCGAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATACGAAGAGTTGAAGAGAGTGAATCCTCGTGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCATTTGTGCTTCGACTTACACTTTTCCTGCCTCAATGCCATTGATACTCTTGAAAAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCATAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTGTAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACTGTATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCTAGAAGAATGTGCTGTGTCATGCACTCGATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAACCTCATTCTCGTCTTGTCTCGATGACCATCACCACCACCCCCCTTTACCAGCTTCTAAAGGAAAGGAGCCAGACATAAATTTTGGTTCTACAAGTATCACTGGGCCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAACTTCAGTGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAGAATTTCCAACTTGTGGCCGATGTCGATCCAGCCCTCAACGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCGCTTTTCAAGCCTTTGCCATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG | 1137 | 45.65 | MSFKSFFRELREIKDGIRIKTKRGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESESSWPARTVVLFCASVCKSWRNITQEIVKTPEHLCFDLHFSCLNAIDTLEKPGPRDSPIQCYVRRHRATSTYLLYSGLVPCRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYCIGAISYELNVLRTRGPRRMCCVMHSIPASCIQQGGNAPTPTSFSSCLDDHHHHPPLPASKGKEPDINFGSTSITGPPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5398418 | 5400979 | + | Lsi01G006690.1 | Lsi01g00669 | 653327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00669 | 378 | Pfam | F-box domain | 55 | 102 | IPR001810 | GO:0005515 | |
Lsi01g00669 | 378 | Gene3D | - | 48 | 103 | - | - | |
Lsi01g00669 | 378 | ProSitePatterns | Tub family signature 2. | 363 | 378 | IPR018066 | - | |
Lsi01g00669 | 378 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 155 | 378 | - | - | |
Lsi01g00669 | 378 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 154 | - | - | |
Lsi01g00669 | 378 | SUPERFAMILY | F-box domain | 49 | 99 | IPR036047 | GO:0005515 | |
Lsi01g00669 | 378 | ProSitePatterns | Tub family signature 1. | 306 | 319 | IPR018066 | - | |
Lsi01g00669 | 378 | MobiDBLite | consensus disorder prediction | 242 | 275 | - | - | |
Lsi01g00669 | 378 | SUPERFAMILY | Tubby C-terminal domain-like | 116 | 378 | IPR025659 | - | |
Lsi01g00669 | 378 | PANTHER | TUBBY-RELATED | 155 | 378 | - | - | |
Lsi01g00669 | 378 | PANTHER | TUBBY-RELATED | 1 | 154 | - | - | |
Lsi01g00669 | 378 | MobiDBLite | consensus disorder prediction | 23 | 47 | - | - | |
Lsi01g00669 | 378 | Gene3D | Tubby Protein; Chain A | 151 | 372 | IPR025659 | - | |
Lsi01g00669 | 378 | MobiDBLite | consensus disorder prediction | 23 | 38 | - | - | |
Lsi01g00669 | 378 | Pfam | Tub family | 155 | 373 | IPR000007 | - | |
Lsi01g00669 | 378 | PRINTS | Tubby superfamily signature | 356 | 378 | IPR000007 | - | |
Lsi01g00669 | 378 | PRINTS | Tubby superfamily signature | 306 | 322 | IPR000007 | - | |
Lsi01g00669 | 378 | PRINTS | Tubby superfamily signature | 199 | 226 | IPR000007 | - | |
Lsi01g00669 | 378 | PRINTS | Tubby superfamily signature | 335 | 354 | IPR000007 | - | |
Lsi01g00669 | 378 | PRINTS | Tubby superfamily signature | 288 | 305 | IPR000007 | - | |
Lsi01g00669 | 378 | PRINTS | Tubby superfamily signature | 150 | 174 | IPR000007 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g00669 | Lsi07g00258 | CCT | |
Lsi01g00669 | Lsi07g00258 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00669 | Lsi-Chr1:5398418 | Lsi05g00201 | Lsi-Chr5:2777209 | 2.78E-116 | dispersed | |
Lsi01g00669 | Lsi-Chr1:5398418 | Lsi04g01686 | Lsi-Chr4:24240314 | 8.56E-148 | wgd | |
Lsi01g00669 | Lsi-Chr1:5398418 | Lsi07g00258 | Lsi-Chr7:2829163 | 4.11E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24599 | PF01167 | Tub | 4.00E-76 | CL0395 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00669 | K19600 | - | csv:101221704 | 653.284 |