Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00669 ATGTCCTTCAAAAGCTTTTTTCGGGAGCTAAGGGAAATAAAAGATGGAATTAGAATCAAGACGAAACGAGGGGGGGAAGGGAGGAACTGGCGAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATACGAAGAGTTGAAGAGAGTGAATCCTCGTGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCATTTGTGCTTCGACTTACACTTTTCCTGCCTCAATGCCATTGATACTCTTGAAAAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCATAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTGTAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACTGTATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCTAGAAGAATGTGCTGTGTCATGCACTCGATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAACCTCATTCTCGTCTTGTCTCGATGACCATCACCACCACCCCCCTTTACCAGCTTCTAAAGGAAAGGAGCCAGACATAAATTTTGGTTCTACAAGTATCACTGGGCCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAACTTCAGTGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAGAATTTCCAACTTGTGGCCGATGTCGATCCAGCCCTCAACGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCGCTTTTCAAGCCTTTGCCATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1137 45.65 MSFKSFFRELREIKDGIRIKTKRGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESESSWPARTVVLFCASVCKSWRNITQEIVKTPEHLCFDLHFSCLNAIDTLEKPGPRDSPIQCYVRRHRATSTYLLYSGLVPCRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYCIGAISYELNVLRTRGPRRMCCVMHSIPASCIQQGGNAPTPTSFSSCLDDHHHHPPLPASKGKEPDINFGSTSITGPPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5398418 5400979 + Lsi01G006690.1 Lsi01g00669 653327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00669 378 Pfam F-box domain 55 102 IPR001810 GO:0005515
Lsi01g00669 378 Gene3D - 48 103 - -
Lsi01g00669 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Lsi01g00669 378 PANTHER TUBBY-LIKE F-BOX PROTEIN 155 378 - -
Lsi01g00669 378 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 154 - -
Lsi01g00669 378 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Lsi01g00669 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Lsi01g00669 378 MobiDBLite consensus disorder prediction 242 275 - -
Lsi01g00669 378 SUPERFAMILY Tubby C-terminal domain-like 116 378 IPR025659 -
Lsi01g00669 378 PANTHER TUBBY-RELATED 155 378 - -
Lsi01g00669 378 PANTHER TUBBY-RELATED 1 154 - -
Lsi01g00669 378 MobiDBLite consensus disorder prediction 23 47 - -
Lsi01g00669 378 Gene3D Tubby Protein; Chain A 151 372 IPR025659 -
Lsi01g00669 378 MobiDBLite consensus disorder prediction 23 38 - -
Lsi01g00669 378 Pfam Tub family 155 373 IPR000007 -
Lsi01g00669 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Lsi01g00669 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Lsi01g00669 378 PRINTS Tubby superfamily signature 199 226 IPR000007 -
Lsi01g00669 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Lsi01g00669 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Lsi01g00669 378 PRINTS Tubby superfamily signature 150 174 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00669 Lsi07g00258 CCT
Lsi01g00669 Lsi07g00258 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00669 Lsi-Chr1:5398418 Lsi05g00201 Lsi-Chr5:2777209 2.78E-116 dispersed
Lsi01g00669 Lsi-Chr1:5398418 Lsi04g01686 Lsi-Chr4:24240314 8.56E-148 wgd
Lsi01g00669 Lsi-Chr1:5398418 Lsi07g00258 Lsi-Chr7:2829163 4.11E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24599 PF01167 Tub 4.00E-76 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00669 K19600 - csv:101221704 653.284