Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00671 ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATCATCCATTTCTAACAACGGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCAATTTTCTCATCATCACAAACTGAATCTCCAGCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCAGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCTTCTGTTGTTACTCCGCCACCGCCAATTGCCAGCAGTAGATTGATCTCAAGAACACCATCATTTCCAGGTGCAACGGACAACAGTATTCCTTCCTCGGTAATTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCATCCTCGCAGCAAGCTTTACCCACTGGTTTCTTCATCTCCAACACCATCAGAAACATTGGCCATCGCACTGATAGGACACCAGTTGTTCCAGTTTCCCGTCACCATCAATTACCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCAGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCTAATAATGGTGCCCGCGACCTGTTCGGTCAGTCGACACAACTAATAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1008 46.13 MEMRGEDEEIGGTPNSPLCYNNPSSNRESSTKLPNSDHPFLTTADRRRDHTVPQLQFSHHHKLNLQHIHKQHTRDHPEATPDPPIQPSISASPPSVVTPPPPIASSRLISRTPSFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPSSQQALPTGFFISNTIRNIGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQSTQLIKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5411171 5412178 - Lsi01G006710.1 Lsi01g00671 653329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00671 335 MobiDBLite consensus disorder prediction 15 38 - -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 80 101 - -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 1 47 - -
Lsi01g00671 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 62 333 - -
Lsi01g00671 335 Gene3D - 261 332 - -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 105 122 - -
Lsi01g00671 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Lsi01g00671 335 SUPERFAMILY Homeodomain-like 268 332 IPR009057 -
Lsi01g00671 335 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Lsi01g00671 335 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 271 328 IPR006455 -
Lsi01g00671 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 62 333 - -
Lsi01g00671 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 66 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00671 Lsi-Chr1:5411171 Lsi08g01003 Lsi-Chr8:18507811 1.00E-58 dispersed
Lsi02g00260 Lsi-Chr2:2227870 Lsi01g00671 Lsi-Chr1:5411171 1.02E-39 dispersed
Lsi07g00255 Lsi-Chr7:2801115 Lsi01g00671 Lsi-Chr1:5411171 1.93E-60 transposed
Lsi01g00671 Lsi-Chr1:5411171 Lsi08g01390 Lsi-Chr8:22180458 7.13E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24600 PF04770 ZF-HD_dimer 9.90E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00671 - - csv:101220687 580.482