Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00671 | ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATCATCCATTTCTAACAACGGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCAATTTTCTCATCATCACAAACTGAATCTCCAGCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCAGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCTTCTGTTGTTACTCCGCCACCGCCAATTGCCAGCAGTAGATTGATCTCAAGAACACCATCATTTCCAGGTGCAACGGACAACAGTATTCCTTCCTCGGTAATTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCATCCTCGCAGCAAGCTTTACCCACTGGTTTCTTCATCTCCAACACCATCAGAAACATTGGCCATCGCACTGATAGGACACCAGTTGTTCCAGTTTCCCGTCACCATCAATTACCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCAGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCTAATAATGGTGCCCGCGACCTGTTCGGTCAGTCGACACAACTAATAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA | 1008 | 46.13 | MEMRGEDEEIGGTPNSPLCYNNPSSNRESSTKLPNSDHPFLTTADRRRDHTVPQLQFSHHHKLNLQHIHKQHTRDHPEATPDPPIQPSISASPPSVVTPPPPIASSRLISRTPSFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPSSQQALPTGFFISNTIRNIGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQSTQLIKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5411171 | 5412178 | - | Lsi01G006710.1 | Lsi01g00671 | 653329 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00671 | 335 | MobiDBLite | consensus disorder prediction | 15 | 38 | - | - | |
Lsi01g00671 | 335 | MobiDBLite | consensus disorder prediction | 80 | 101 | - | - | |
Lsi01g00671 | 335 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Lsi01g00671 | 335 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 7 | 62 | 333 | - | - | |
Lsi01g00671 | 335 | Gene3D | - | 261 | 332 | - | - | |
Lsi01g00671 | 335 | MobiDBLite | consensus disorder prediction | 105 | 122 | - | - | |
Lsi01g00671 | 335 | Pfam | ZF-HD protein dimerisation region | 128 | 180 | IPR006456 | - | |
Lsi01g00671 | 335 | SUPERFAMILY | Homeodomain-like | 268 | 332 | IPR009057 | - | |
Lsi01g00671 | 335 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 129 | 180 | IPR006456 | - | |
Lsi01g00671 | 335 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 271 | 328 | IPR006455 | - | |
Lsi01g00671 | 335 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 62 | 333 | - | - | |
Lsi01g00671 | 335 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 130 | 179 | IPR006456 | - | |
Lsi01g00671 | 335 | MobiDBLite | consensus disorder prediction | 66 | 122 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00671 | Lsi-Chr1:5411171 | Lsi08g01003 | Lsi-Chr8:18507811 | 1.00E-58 | dispersed | |
Lsi02g00260 | Lsi-Chr2:2227870 | Lsi01g00671 | Lsi-Chr1:5411171 | 1.02E-39 | dispersed | |
Lsi07g00255 | Lsi-Chr7:2801115 | Lsi01g00671 | Lsi-Chr1:5411171 | 1.93E-60 | transposed | |
Lsi01g00671 | Lsi-Chr1:5411171 | Lsi08g01390 | Lsi-Chr8:22180458 | 7.13E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24600 | PF04770 | ZF-HD_dimer | 9.90E-31 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00671 | - | - | csv:101220687 | 580.482 |