Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00671 ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATCATCCATTTCTAACAACGGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCAATTTTCTCATCATCACAAACTGAATCTCCAGCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCAGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCTTCTGTTGTTACTCCGCCACCGCCAATTGCCAGCAGTAGATTGATCTCAAGAACACCATCATTTCCAGGTGCAACGGACAACAGTATTCCTTCCTCGGTAATTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCATCCTCGCAGCAAGCTTTACCCACTGGTTTCTTCATCTCCAACACCATCAGAAACATTGGCCATCGCACTGATAGGACACCAGTTGTTCCAGTTTCCCGTCACCATCAATTACCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCAGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCTAATAATGGTGCCCGCGACCTGTTCGGTCAGTCGACACAACTAATAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1008 46.13 MEMRGEDEEIGGTPNSPLCYNNPSSNRESSTKLPNSDHPFLTTADRRRDHTVPQLQFSHHHKLNLQHIHKQHTRDHPEATPDPPIQPSISASPPSVVTPPPPIASSRLISRTPSFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPSSQQALPTGFFISNTIRNIGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQSTQLIKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5411171 5412178 - Lsi01G006710.1 Lsi01g00671 653329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00671 335 MobiDBLite consensus disorder prediction 15 38 - -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 80 101 - -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 1 47 - -
Lsi01g00671 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 62 333 - -
Lsi01g00671 335 Gene3D - 261 332 - -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 105 122 - -
Lsi01g00671 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Lsi01g00671 335 SUPERFAMILY Homeodomain-like 268 332 IPR009057 -
Lsi01g00671 335 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Lsi01g00671 335 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 271 328 IPR006455 -
Lsi01g00671 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 62 333 - -
Lsi01g00671 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Lsi01g00671 335 MobiDBLite consensus disorder prediction 66 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00671 - - - csv:101220687 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00671 Lsi-Chr1:5411171 Lsi08g01003 Lsi-Chr8:18507811 1.00E-58 dispersed
Lsi02g00260 Lsi-Chr2:2227870 Lsi01g00671 Lsi-Chr1:5411171 1.02E-39 dispersed
Lsi07g00255 Lsi-Chr7:2801115 Lsi01g00671 Lsi-Chr1:5411171 1.93E-60 transposed
Lsi01g00671 Lsi-Chr1:5411171 Lsi08g01390 Lsi-Chr8:22180458 7.13E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24600 PF04770 ZF-HD_dimer 9.90E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00671 Lsi_Chr01 FPKM 1.049159 1.406703 0.498973 0.903988 5.405308 4.828364 5.968267 0.265294 0.195479 0.077403