Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00673 ATGATGCAACGATGTGGCAGCTACCAATGTTACTCTGCAGGAGAATGTTCTTGTGGCGGATTTTACGGGCAGCAGGGTAGTTACTTCTCTATGCCTACCTACAACAATTACTATGAAACCGAACATTATTCTTTCGAATCTTCTTCTCCGGTTGATTGTACGCTTTCTCTCGGAACGCCGTCCACTCGTATGACGGAGTACGATGAGAAACGCCGTGAAGAACAACACTCTGCTTCTAATTTTGCTTGGGATTTACCTCGTACCAAACATGCTCATTCCTCTAAAACCAGCCGCCGCGGCGCTAATAGCGGCGGTGATAAATCTAGTGCCAATAACGATCAAATGTTCGCCCGCCACTGCGCTAATTGTGATACCACTACTACCCCTCTCTGGCGCAACGGCCCTAGCGGTCCTAAGTCGTTATGTAATGCGTGTGGGATTAGATACAAGAAGGAAGAAAGAAAAGCAGCAAGTTCAGGGCAACAAGCAAATTCAATGTATAGGAATGAAGCGAACTCATGGCTTCAGCATCATTCTCACAGCCAAAAAACGCCGAGATTCTCACATGGCATTACCAATGATCTCAATCCCAGCGTTGCCTTTCTCTCATGGAGTCTCAATGACACAGAGCAACCTCAGCTTTACTATGATTTCACAAGTTGA 663 46.15 MMQRCGSYQCYSAGECSCGGFYGQQGSYFSMPTYNNYYETEHYSFESSSPVDCTLSLGTPSTRMTEYDEKRREEQHSASNFAWDLPRTKHAHSSKTSRRGANSGGDKSSANNDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYRNEANSWLQHHSHSQKTPRFSHGITNDLNPSVAFLSWSLNDTEQPQLYYDFTS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5428572 5429462 - Lsi01G006730.1 Lsi01g00673 653331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00673 220 MobiDBLite consensus disorder prediction 97 111 - -
Lsi01g00673 220 CDD ZnF_GATA 120 151 IPR000679 GO:0006355|GO:0043565
Lsi01g00673 220 MobiDBLite consensus disorder prediction 65 111 - -
Lsi01g00673 220 Gene3D - 116 185 IPR013088 GO:0006355|GO:0008270
Lsi01g00673 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 155 - -
Lsi01g00673 220 SMART GATA_3 114 171 IPR000679 GO:0006355|GO:0043565
Lsi01g00673 220 Pfam GATA zinc finger 120 154 IPR000679 GO:0006355|GO:0043565
Lsi01g00673 220 PANTHER GATA TRANSCRIPTION FACTOR 18 1 217 - -
Lsi01g00673 220 ProSitePatterns GATA-type zinc finger domain. 120 145 IPR000679 GO:0006355|GO:0043565
Lsi01g00673 220 PANTHER GATA TRANSCRIPTION FACTOR 18 1 217 IPR044272 GO:0003700|GO:0009908
Lsi01g00673 220 ProSiteProfiles GATA-type zinc finger domain profile. 114 150 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00673 - - - cmo:103485050 441.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00673 Lsi-Chr1:5428572 Lsi07g00251 Lsi-Chr7:2782895 7.63E-43 dispersed
Lsi01g00673 Lsi-Chr1:5428572 Lsi04g01429 Lsi-Chr4:22035852 2.98E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g976 Blo04g00918 Blo16g00045 . . Bpe15g00429 Bpe13g00444 . . . . . Cma07g00487 Car03g00682 Car07g00427 Sed14g1121 Cpe19g00810 Cpe10g00615 Bhi03g01300 Tan03g1982 Cmetu07g2099 . Hepe04g1516 . . Cla01g01911 Cam01g1998 Cec04g1653 Cco04g1715 Clacu01g2017 Cmu01g1891 Cre04g1567 . . . . Lsi01g00673 . Chy07g01246 . . . Bda11g01866 . . . Bma03g00990 . . Cmo03g00775 Cmo07g00485 . . . . . . . . . . . . . . . . . . . . . . Chy02g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002166 2 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 2 2 2 2 2 4 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24601 PF00320 GATA 3.10E-18 CL0167 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00673 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.84948 0.785895 0.855786 0.262628 0.0 0.0