Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00674 ATGGGGTTGCTTAGTATCATTCGAAAAATTAAAAGGAAAGAGAAGGAAATGCGTATTCTTATGGTTGGCCTCGACAACTCTGGGAAAACTACCATCGTTTTAAAAATTAATGGGGAAGATACCAGCGTTATCAGCCCTACACTTGGATTTAATATCAAGACCATCACCTATCACAAGTACACACTTAACATATGGGATGTTGGGGGCCAAAAGACTATAAGATCATATTGGAGGAACTATTTTGAGCAGACGGATGGACTAGTATGGGTAGTTGACAGTTCTGATCTTAGAAGATTGGATGATTGCAAATTGGAACTTGATAATCTTTTGAAAGAAGAGATCACTGTTCTTGTCACTTTTAGAATGGAAACTTCAAGTTTGGTCACCCTGTTGTATGTTATTACTATTACCTTGGGGTTGGGGTGTGAGGTATTGAATTTGGAAGCCATGGACAAAACACGGCACTGGAAAATTGTTGGTTGTAGTGCTTACACTGGTGAGGGGCTGCTGGAGGGGTTCGATTGGTTGGTCCAAGACATTGCCTCCAGAATCTATATGTTAGACTAA 567 40.21 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKLELDNLLKEEITVLVTFRMETSSLVTLLYVITITLGLGCEVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5445460 5448367 + Lsi01G006740.1 Lsi01g00674 653332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00674 188 Pfam ADP-ribosylation factor family 4 180 IPR006689 GO:0003924|GO:0005525
Lsi01g00674 188 PRINTS GTP-binding SAR1 protein signature 18 41 IPR006689 GO:0003924|GO:0005525
Lsi01g00674 188 PRINTS GTP-binding SAR1 protein signature 46 70 IPR006689 GO:0003924|GO:0005525
Lsi01g00674 188 PRINTS GTP-binding SAR1 protein signature 154 178 IPR006689 GO:0003924|GO:0005525
Lsi01g00674 188 PRINTS GTP-binding SAR1 protein signature 73 98 IPR006689 GO:0003924|GO:0005525
Lsi01g00674 188 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 1 188 - -
Lsi01g00674 188 ProSiteProfiles small GTPase Arf family profile. 10 180 - -
Lsi01g00674 188 SMART sar_sub_1 3 180 IPR006689 GO:0003924|GO:0005525
Lsi01g00674 188 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 1 188 IPR044612 GO:0003924
Lsi01g00674 188 SMART arf_sub_2 1 184 - -
Lsi01g00674 188 Gene3D - 5 185 IPR027417 -
Lsi01g00674 188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 182 IPR027417 -
Lsi01g00674 188 TIGRFAM small_GTP: small GTP-binding protein domain 15 103 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00674 K07943 ARL2; ADP-ribosylation factor-like protein 2 - csv:101219492 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00674 Lsi-Chr1:5445460 Lsi02g02502 Lsi-Chr2:31488430 2.04E-40 dispersed
Lsi01g00674 Lsi-Chr1:5445460 Lsi08g01676 Lsi-Chr8:24519267 4.05E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g974 . . . . . . . . . . . Cma07g00488 . Car07g00429 Sed14g1119 Cpe19g00808 . Bhi03g01298 Tan03g1980 Cmetu08g1666 . Hepe04g1514 . . Cla01g01908 Cam01g1996 Cec04g1649 . . . Cre04g1565 . . Cone6ag1622 Cone9ag1547 Lsi01g00674 . . Cme08g00848 . . . . . . . . . . Cmo07g00486 . . . . . . . . . . . . . . . . . . . . . Csa06g03240 Chy02g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004650 3 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 2 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00674 Lsi_Chr01 FPKM 58.711735 63.579021 4.484873 5.800261 19.408854 20.529734 19.090767 6.521687 9.238705 7.863262