Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00675 ATGAAATTCCTGGCGTTGGCGCCAATCGCTTTCCTTGATCATGATGCCGCCGCATTCCCAACCATTACCAGCCACTGCACCCGCCCCGCAGCACGCCGCCGTTCGCCCCATCCCGCACAACGTTACTGCCCGACGACGCTAATTTCAGATCCCCAAGGTATTTCTTGCAATCACACTCGGCCTCAGCTTGTCCCAATCTCTCTCTGTGGTAGCATAATCTTCAATCGCAAGCCCCAACAATCCATCCTCTCTGTTCCGTCCTCTCTCGATCGTCCCCCTCAATCTCACTCACTCGGCCTACTTCAAGCAGACATCCTTGAGGACCTTCATAGAATGATTGGTGAGTCGGAGGGCTTAACGTTGTGGAGTATCTTTCTCATCAGGTTATCTGATTCTCGTCCATATGGGGATCAAGAAAATAGGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAAGCAGCAGGACGTCTTTTGTTTCTTAAATTGGGATACAGCCATGAAGTTGAACTAACCGTTCCACCGGCTGTTCGCGTCTTTTGCTTCAAAAACAATGTTGTGTGCTGCACAGGGATTGACAAATATAGAGTGCACCAATTTGCTGCTTCAGTTCGTAGCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAAGAAACAAGGAAAGAAGTCTAAATAA 702 48.43 MKFLALAPIAFLDHDAAAFPTITSHCTRPAARRRSPHPAQRYCPTTLISDPQGISCNHTRPQLVPISLCGSIIFNRKPQQSILSVPSSLDRPPQSHSLGLLQADILEDLHRMIGESEGLTLWSIFLIRLSDSRPYGDQENRIVGVGYKARAEAAGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5448801 5452124 - Lsi01G006750.1 Lsi01g00675 653333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00675 233 ProSitePatterns Ribosomal protein L6 signature 1. 209 217 IPR002358 GO:0003735|GO:0005840|GO:0006412
Lsi01g00675 233 PRINTS Ribosomal protein L6 signature 154 170 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lsi01g00675 233 PRINTS Ribosomal protein L6 signature 196 217 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lsi01g00675 233 PRINTS Ribosomal protein L6 signature 124 149 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lsi01g00675 233 Gene3D - 138 232 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lsi01g00675 233 PANTHER RIBOSOMAL PROTEIN L6-RELATED 141 232 - -
Lsi01g00675 233 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 141 232 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lsi01g00675 233 Pfam Ribosomal protein L6 143 219 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lsi01g00675 233 SUPERFAMILY Ribosomal protein L6 142 231 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00675 K02933 RP-L6, MRPL6, rplF; large subunit ribosomal protein L6 - qsu:111998851 185.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00675 Lsi-Chr1:5448801 Lsi11g01253 Lsi-Chr11:21166696 1.99E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g973 . . . . . . . . . . Cma03g00749 . Car03g00684 . . . Cpe10g00613 Bhi03g01297 . . . Hepe04g1513 . . Cla01g01907 . . Cco04g1711 . Cmu01g1888 . . . . . Lsi01g00675 . . Cme08g00847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03239 Chy02g00650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008885 2 4 2 2 2 0 1 1 0 1 1 0 1 1 2 0 1 0 1 0 1 1 2 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00675 Lsi_Chr01 FPKM 17.599483 13.080872 16.582317 15.59378 22.601654 20.74774 26.819414 34.255859 41.171638 43.484905