Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00676 ATGGACTTGAAGTTGAAGTATTCCATTTACCGATCAAGGAACAGAGATGGAGCTATGTGGAATCGAAGCTTCACCAGCGATGTAACGCGCGCAGCGTTGAAGAAGAAGAAATGGGACGCGCTCATCGTCGGCGCAGGCCACAACGGTTTGATAGCCGCTGCTTATCTTGCCCGTGGCGGCCTCTCTGTTGCCGTTCTTGAGAGGCGCCATGTGATCGGCGGCGCTGCTGTTACCGAAGAGCTAATTCCAGGGTTTAAGTTCTCTCGCTGTAGTTACCTCCTAAGCCTCCTCCGACCATCCATCATCAGGGACTTGGAATTGAGGAGACATGGGTTGAAGCTATTGAAACCGATGGCCACATCTTTTACACCCTGCCTCGATGGTCGTTATCTTCTACTTGGACTGAATGATGGACATGATTACTTGGAGATATCCAAGTTTTCTAAAAGGGATGCAGATGTCTACCCAAGATATGAAAGACAGCTTCATAAGTACTGTAAATTCATGGATTTTATCTTGGATTCGCCAACTCCTGAAGCATTACACCGAGGTTCATCATTTAATGACCGGTTGAGAGATAAGGTGCAAAACTCTATTTTCTGGGCTCGTTGTCTCCGGCATGCGCTATCATTAGGTCAAAAAGATATGGTGGAGTTGATAGACCTTCTAGTATCACCAACTTCTAAGGTTTTAAATGAGTGGTTTGAGTCAGACGTATTGAAGGCAACACTTGCAGGAGATGCCATCATTGGGACTATGACAAGCATCCATACTTCTGGAAGTGGTTATGTTCTACTACATCATGTAATGGGAGAAACTACTCATGGTGATCGTAATATTTGGTCACATGTTGAAGGTGGGATGGGTTCTGTATCCATGGCCATAGGCAATGCTGCCAAAGAAGCTGGAGTTCATATAGAAACAAATGCAGAGGTTTCAGAACTGATGATTGAAGCCTCTGGTAGATTAAAGGGGGTGTTACTGGCGGATGGGACACAAGTGCATTCTTCAGTTGTTTTATCAAATGCAACCCCATACAAAACATTCATGGAAATGGTGCCTCAAACTTTTCTTCCAGATGATTTCCTACGGGCTATCAAATGTTCTGACTATACCTCAGGAACAACAAAAATAAACGTTGCTGTTGACAAATTGCCGCACTTCAAGTCTTGCAATTTGAATAATCAAGATGAGGTGGGTCCTCATCATACAACAACTATTCATATCGGTGCTGAAAGAATGGAAGATATTGGCACAGCTTGCCAAGATGCATGGAATGGCTTTCCATCGAAAAGACCTGTTATGGAGATGACAATTCCTTCCACTCTGGACAAAACTGTATCTCCACCTGGTAAGCACGTAATCAGCTTATTTACACAGTATACACCTTACAAACCCTTGGATGGCAGCTGGGAAGATGTTACATACAGGGATTTGTATGCCAAAAAATGTTTTAAGTTGATTGATGAATATGCACCTGGTTTCAGCTCATCAATCATCGGTTATGACATGCTGACACCACCTGATCTTGAGAGGGAAATTGGTCTGACTGGAGGAAATATTTTTCATGGGGCTATGGGTTTAGATTCTCTTTTCTTGATGCGGCCTGCAAAAGGATGGTCAAATCACAGAACACCAATTAAAGGATTGTACCTCTGTGGCAGTGGGTCGCATCCTGGAGGAGGTGTCATGGGGGCACCAGGTCACAATGCTGCATCTGTTGTTCTTAAGGATCTGCGTGAGCCATAG 1749 44.31 MDLKLKYSIYRSRNRDGAMWNRSFTSDVTRAALKKKKWDALIVGAGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLLSLLRPSIIRDLELRRHGLKLLKPMATSFTPCLDGRYLLLGLNDGHDYLEISKFSKRDADVYPRYERQLHKYCKFMDFILDSPTPEALHRGSSFNDRLRDKVQNSIFWARCLRHALSLGQKDMVELIDLLVSPTSKVLNEWFESDVLKATLAGDAIIGTMTSIHTSGSGYVLLHHVMGETTHGDRNIWSHVEGGMGSVSMAIGNAAKEAGVHIETNAEVSELMIEASGRLKGVLLADGTQVHSSVVLSNATPYKTFMEMVPQTFLPDDFLRAIKCSDYTSGTTKINVAVDKLPHFKSCNLNNQDEVGPHHTTTIHIGAERMEDIGTACQDAWNGFPSKRPVMEMTIPSTLDKTVSPPGKHVISLFTQYTPYKPLDGSWEDVTYRDLYAKKCFKLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPAKGWSNHRTPIKGLYLCGSGSHPGGGVMGAPGHNAASVVLKDLREP 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5452050 5458429 + Lsi01G006760.1 Lsi01g00676 653334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00676 582 SUPERFAMILY FAD/NAD(P)-binding domain 36 459 IPR036188 -
Lsi01g00676 582 Gene3D - 243 387 IPR036188 -
Lsi01g00676 582 PANTHER FAD/NAD(P)-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 19 580 - -
Lsi01g00676 582 Gene3D - 37 127 IPR036188 -
Lsi01g00676 582 Pfam NAD(P)-binding Rossmann-like domain 42 92 - -
Lsi01g00676 582 PANTHER PHYTOENE DEHYDROGENASE 19 580 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00676 - - - csv:101218783 1060.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00676 Lsi07g00266 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01788 Lsi-Chr3:29303003 Lsi01g00676 Lsi-Chr1:5452050 6.78E-14 transposed
Lsi05g00733 Lsi-Chr5:10020109 Lsi01g00676 Lsi-Chr1:5452050 1.35E-12 transposed
Lsi07g00266 Lsi-Chr7:2891358 Lsi01g00676 Lsi-Chr1:5452050 4.80E-134 transposed
Lsi01g00676 Lsi-Chr1:5452050 Lsi07g00265 Lsi-Chr7:2880052 4.55E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g970 . . . . . . Bma09g00076 . . Cmo16g00663 Cma03g00750 . Car03g00685 . Sed14g1114 . . Bhi03g01291 Tan03g1978 Cmetu07g0294 . Hepe04g1510 . . . . . . . . . . . . . Lsi01g00676 . . . . . Bda11g01868 . . . . . . Cmo03g00779 . Cma16g00608 . . . . . . . . . . . . Cla07g00795 Cam07g0860 Cec07g0911 Cco07g0893 Clacu07g0834 Cmu07g0838 Cre07g1195 Lsi07g00266 . Chy02g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001846 2 2 2 3 2 3 2 4 3 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 1 2 4 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00676 Lsi_Chr01 FPKM 15.096977 14.398598 8.966022 9.000753 33.711613 31.672998 32.855854 6.276611 6.77314 5.111716